Abca9 ATP-binding cassette, sub-family A member 9 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Abca9provided by MGI
Official Full Name: ATP-binding cassette, sub-family A member 9provided by MGI
Primary source: MGI:MGI:2386796
See related: Ensembl:ENSMUSG00000041797 AllianceGenome:MGI:2386796
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: D630040K07Rik
Summary: Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Located in mitochondrion. Is expressed in brain meninges; embryo mesenchyme; musculature; and tail. Orthologous to human ABCA9 (ATP binding cassette subfamily A member 9). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Broad expression in limb E14.5 (RPKM 4.2), bladder adult (RPKM 3.2) and 25 other tissues See more
Orthologs: human all
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Genomic context

Location:: 11 E1; 11 73.22 cM

Exon count:: 41

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	11	NC_000077.7 (109990919..110059532, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	11	NC_000077.6 (110100749..110168274, complement)

Chromosome 11 - NC_000077.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables ABC-type transporter activity	IEA Inferred from Electronic Annotation more info
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info
enables ATPase-coupled transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables lipid transporter activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in lipid transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in intracellular membrane-bounded organelle	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	HDA more info	PubMed

General protein information

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Preferred Names: ATP-binding cassette sub-family A member 9

Names: ATP-binding cassette transporter sub-family A member 9; ATP-binding cassette, sub-family A (ABC1), member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_147220.2 → NP_671753.2 ATP-binding cassette sub-family A member 9

See identical proteins and their annotated locations for NP_671753.2

Status: VALIDATED

Source sequence(s)

AL603792

Consensus CDS

CCDS25589.1

UniProtKB/Swiss-Prot

A2A6R5, Q8C114, Q8K449

Related

ENSMUSP00000036338.4, ENSMUST00000044850.4

Conserved Domains (1) summary

TIGR01257
Location:128 → 1600

rim_protein; retinal-specific rim ABC transporter

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000077.7 Reference GRCm39 C57BL/6J

Range

109990919..110059532 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_036156602.1 → XP_036012495.1 ATP-binding cassette sub-family A member 9 isoform X1

UniProtKB/Swiss-Prot

A2A6R5, Q8C114, Q8K449

Conserved Domains (1) summary

TIGR01257
Location:128 → 1600

rim_protein; retinal-specific rim ABC transporter
XM_017314486.3 → XP_017169975.1 ATP-binding cassette sub-family A member 9 isoform X1

UniProtKB/Swiss-Prot

A2A6R5, Q8C114, Q8K449

Conserved Domains (1) summary

TIGR01257
Location:128 → 1600

rim_protein; retinal-specific rim ABC transporter
XM_036156603.1 → XP_036012496.1 ATP-binding cassette sub-family A member 9 isoform X2

Conserved Domains (1) summary

TIGR01257
Location:11 → 1280

rim_protein; retinal-specific rim ABC transporter
XM_017314487.3 → XP_017169976.1 ATP-binding cassette sub-family A member 9 isoform X2

Conserved Domains (1) summary

TIGR01257
Location:11 → 1280

rim_protein; retinal-specific rim ABC transporter