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nhr-104 NR LBD domain-containing protein;Nuclear receptor domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177248, updated on 2-Nov-2024

Summary

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Official Symbol
nhr-104
Official Full Name
NR LBD domain-containing protein;Nuclear receptor domain-containing protein
Primary source
WormBase:WBGene00003694
Locus tag
CELE_R11E3.5
See related
AllianceGenome:WB:WBGene00003694
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nhr-104 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
10
Sequence:
Chromosome: IV; NC_003282.8 (4784469..4788692, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene TransThyretin-Related family domain Neighboring gene SET domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  2. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NR LBD domain-containing protein;Nuclear receptor domain-containing protein
NP_001023342.1
  • Confirmed by transcript evidence
NP_001293849.1
  • Confirmed by transcript evidence
NP_741384.1
  • Confirmed by transcript evidence
NP_741385.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4784469..4788692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171326.5 → NP_741384.1  NR LBD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741384.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L0B0
    Conserved Domains (2) summary
    smart00399
    Location:5 → 74
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    smart00430
    Location:156 → 333
    HOLI; Ligand binding domain of hormone receptors

  2. NM_001306920.3 → NP_001293849.1  NR LBD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293849.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    S6FD08
    Conserved Domains (1) summary
    smart00430
    Location:86 → 263
    HOLI; Ligand binding domain of hormone receptors

  3. NM_001028171.5 → NP_001023342.1  NR LBD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023342.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86PJ5
    Conserved Domains (2) summary
    smart00399
    Location:5 → 74
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    smart00430
    Location:156 → 333
    HOLI; Ligand binding domain of hormone receptors

  4. NM_171327.6 → NP_741385.1  Nuclear receptor domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741385.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MXE5
    Conserved Domains (2) summary
    smart00399
    Location:5 → 74
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    smart00430
    Location:156 → 235
    HOLI; Ligand binding domain of hormone receptors
Nucleotide Protein
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