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VNG_RS11935 winged helix-turn-helix domain-containing protein [ Halobacterium salinarum NRC-1 ]

Gene ID: 1449386, updated on 17-Jun-2024

Summary

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Gene symbol
VNG_RS11935
Gene description
winged helix-turn-helix domain-containing protein
Locus tag
VNG_RS11935
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG6402H; VNG_6402H
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Genomic context

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Location:
plasmid: pNRC200
Sequence:
NC_002608.1 (313499..314011, complement)

NC_002608.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene SWIM zinc finger family protein Neighboring gene hypothetical protein Neighboring gene OB-fold nucleic acid binding domain-containing protein Neighboring gene RNA-guided endonuclease TnpB family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002608.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. Winged helix proteins. Gajiwala KS, et al. Curr Opin Struct Biol, 2000 Feb. PMID 10679470
  3. Common fold in helix-hairpin-helix proteins. Shao X, et al. Nucleic Acids Res, 2000 Jul 15. PMID 10908318, Free PMC Article
  4. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895
  5. The SmtB/ArsR family of metalloregulatory transcriptional repressors: Structural insights into prokaryotic metal resistance. Busenlehner LS, et al. FEMS Microbiol Rev, 2003 Jun. PMID 12829264

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
winged helix-turn-helix domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002608.1 Reference assembly

    Range
    313499..314011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010904219.1 MULTISPECIES: winged helix-turn-helix domain-containing protein [Halobacteriales]

    See identical proteins and their annotated locations for WP_010904219.1

    UniProtKB/TrEMBL
    B0R9F8, Q9HHH1
    Conserved Domains (1) summary
    cd00090
    Location:27 → 94
    HTH_ARSR; Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to ...
Nucleotide Protein
Heading Accession and Version

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