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VNG_RS08385 TRAM domain-containing protein [ Halobacterium salinarum NRC-1 ]

Gene ID: 1448597, updated on 25-Mar-2023

Summary

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Gene symbol
VNG_RS08385
Gene description
TRAM domain-containing protein
Locus tag
VNG_RS08385
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG2157C; VNG_2157C
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Genomic context

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Sequence:
NC_002607.1 (1591653..1592105)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene radical SAM protein Neighboring gene flippase activity-associated protein Agl23 Neighboring gene SDR family oxidoreductase Neighboring gene mannose-1-phosphate guanylyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes. Anantharaman V, et al. FEMS Microbiol Lett, 2001 Apr 13. PMID 11313137
  3. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
TRAM domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    1591653..1592105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012289446.1 MULTISPECIES: TRAM domain-containing protein [Halobacterium]

    See identical proteins and their annotated locations for WP_012289446.1

    UniProtKB/TrEMBL
    A0A4D6GV93, A0A510N8I2, A0A841HAG3, A0A895ABL7, A0A895AEM2, B0R773
    Conserved Domains (1) summary
    cl01282
    Location:46 → 108
    TRAM; TRAM domain
Nucleotide Protein
Heading Accession and Version