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VNG_RS07215 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase [ Halobacterium salinarum NRC-1 ]

Gene ID: 1448364, updated on 31-Mar-2024

Summary

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Gene symbol
VNG_RS07215
Gene description
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase
Locus tag
VNG_RS07215
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG1861C; VNG_1861C
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Genomic context

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Sequence:
NC_002607.1 (1375087..1376385)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene chemotaxis signal transducer protein BasT Neighboring gene chemotactic signal transduction system substrate-binding protein BasB Neighboring gene deoxyribose-phosphate aldolase Neighboring gene cation diffusion facilitator family transporter Neighboring gene HIT domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article
  2. Enzymatic modification of tRNAs: MiaB is an iron-sulfur protein. Pierrel F, et al. J Biol Chem, 2002 Apr 19. PMID 11882645
  3. Identification of the miaB gene, involved in methylthiolation of isopentenylated A37 derivatives in the tRNA of Salmonella typhimurium and Escherichia coli. Esberg B, et al. J Bacteriol, 1999 Dec. PMID 10572129, Free PMC Article
  4. TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes. Anantharaman V, et al. FEMS Microbiol Lett, 2001 Apr 13. PMID 11313137
  5. Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Pfeiffer F, et al. Genomics, 2008 Apr. PMID 18313895

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase
WP_010903362.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    1375087..1376385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010903362.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase [Halobacterium salinarum]

    See identical proteins and their annotated locations for WP_010903362.1

    UniProtKB/TrEMBL
    A0A4D6GUM2, A0A841H8W1, B0R6I7, Q9HP07
    Conserved Domains (1) summary
    TIGR01578
    Location:3 → 417
    MiaB-like-B; MiaB-like tRNA modifying enzyme, archaeal-type
Nucleotide Protein
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