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LOC1281377 protein ultraspiracle [ Anopheles gambiae (African malaria mosquito) ]

Gene ID: 1281377, updated on 10-Oct-2024

Summary

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Gene symbol
LOC1281377
Gene description
protein ultraspiracle
See related
VectorBase:AGAMI1_013603
Gene type
protein coding
RefSeq status
MODEL
Organism
Anopheles gambiae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Also known as
USP; AGAP002095
Orthologs
fruit fly all
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Genomic context

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See LOC1281377 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (14981397..15015267, complement)

Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene metal transporter uex Neighboring gene G-box-binding factor Neighboring gene beta-1,3-galactosyltransferase brn Neighboring gene uncharacterized LOC5667630 Neighboring gene transmembrane protein 104 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to ecdysone IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of activator ecdysone receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ultraspiracle homolog; protein ultraspiracle
Names
AGAP002095-PA
AGAP002095-PB
AGAP002095-PC
AGAP002095-PD
ultraspiracle

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference idAnoGambNW_F1_1 Primary Assembly

Genomic

  1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

    Range
    14981397..15015267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061648214.1 → XP_061504198.1  protein ultraspiracle isoform X3

    UniProtKB/TrEMBL
    F5HN02

  2. XM_061648216.1 → XP_061504200.1  protein ultraspiracle isoform X3

    UniProtKB/TrEMBL
    F5HN02

  3. XM_003435980.2 → XP_003436028.1  protein ultraspiracle isoform X3

    See identical proteins and their annotated locations for XP_003436028.1

    UniProtKB/TrEMBL
    F5HN02, F5HN03, Q7PUT9
    Conserved Domains (2) summary
    cd06943
    Location:230 → 465
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:133 → 209
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

  4. XM_061648217.1 → XP_061504201.1  protein ultraspiracle isoform X3

    UniProtKB/TrEMBL
    F5HN02

  5. XM_061648215.1 → XP_061504199.1  protein ultraspiracle isoform X3

    UniProtKB/TrEMBL
    F5HN02

  6. XM_061648219.1 → XP_061504203.1  protein ultraspiracle isoform X3

    UniProtKB/TrEMBL
    F5HN02

  7. XM_061648218.1 → XP_061504202.1  protein ultraspiracle isoform X3

    UniProtKB/TrEMBL
    F5HN02

  8. XM_061648220.1 → XP_061504204.1  protein ultraspiracle isoform X4

  9. XM_061648211.1 → XP_061504195.1  protein ultraspiracle homolog isoform X1

  10. XM_061648213.1 → XP_061504197.1  protein ultraspiracle homolog isoform X2

  11. XM_061648212.1 → XP_061504196.1  protein ultraspiracle homolog isoform X1

  12. XM_320944.6 → XP_320944.6  protein ultraspiracle homolog isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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