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EN1A engrailed homeobox 1a [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102355550, updated on 12-Sep-2024

Summary

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Gene symbol
EN1A
Gene description
engrailed homeobox 1a
See related
Ensembl:ENSLACG00000017310
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Also known as
EN1
Orthologs
human zebrafish all
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Genomic context

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See EN1A in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 9 NC_088147.1 (98363139..98369420)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819095.1 (2023383..2029646, complement)

Chromosome 9 - NC_088147.1Genomic Context describing neighboring genes Neighboring gene complement component 1, q subcomponent-like 2 Neighboring gene macrophage receptor with collagenous structure Neighboring gene uncharacterized LOC102355360 Neighboring gene uncharacterized LOC106702676

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein engrailed-1a
Names
engrailed homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088147.1 Reference fLatCha1.pri

    Range
    98363139..98369420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005991059.3 → XP_005991121.1  homeobox protein engrailed-1a

    UniProtKB/TrEMBL
    H3BCR6
    Related
    ENSLACP00000019687.1
    Conserved Domains (2) summary
    pfam00046
    Location:185 → 238
    Homeobox; Homeobox domain
    pfam10525
    Location:240 → 269
    Engrail_1_C_sig; Engrailed homeobox C-terminal signature domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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