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HER13 hairy-related 13 [ Latimeria chalumnae (coelacanth) ]

Gene ID: 102353186, updated on 26-Apr-2024

Summary

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Gene symbol
HER13
Gene description
hairy-related 13
See related
Ensembl:ENSLACG00000003738
Gene type
protein coding
RefSeq status
MODEL
Organism
Latimeria chalumnae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
Orthologs
zebrafish all
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Genomic context

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See HER13 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 8 NC_088146.1 (38589166..38591946, complement)
101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005822145.1 (94123..96131)

Chromosome 8 - NC_088146.1Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 2-like Neighboring gene period circadian clock 2 Neighboring gene calcium-binding protein 39 Neighboring gene hairy-related 8.2 Neighboring gene uncharacterized LOC102352921

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hairy-related 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLatCha1.pri

Genomic

  1. NC_088146.1 Reference fLatCha1.pri

    Range
    38589166..38591946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006012185.3 → XP_006012247.1  hairy-related 13

    UniProtKB/TrEMBL
    H3A3I1, M3XHN4
    Related
    ENSLACP00000004202.1
    Conserved Domains (2) summary
    cd00083
    Location:23 → 76
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:96 → 134
    Hairy_orange; Hairy Orange
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases