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phox2bb paired like homeobox 2Bb [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102231160, updated on 10-Mar-2024

Summary

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Gene symbol
phox2bb
Gene description
paired like homeobox 2Bb
See related
Ensembl:ENSXMAG00000022004
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
phox2b
Orthologs
zebrafish all
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Genomic context

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See phox2bb in Genome Data Viewer
Location:
chromosome: 23
Exon count:
3
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 23 NC_036465.1 (3676618..3679915)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372229.1 (540744..542493, complement)

Chromosome 23 - NC_036465.1Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 7 Neighboring gene transmembrane protein 33 Neighboring gene LIM and calponin homology domains 1 Neighboring gene cathepsin Z-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired mesoderm homeobox protein 2B
Names
paired like homeobox 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036465.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    3676618..3679915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005800572.2 → XP_005800629.1  paired mesoderm homeobox protein 2B

    See identical proteins and their annotated locations for XP_005800629.1

    UniProtKB/TrEMBL
    A0A3B5Q688
    Related
    ENSXMAP00000027333.1, ENSXMAT00000024652.1
    Conserved Domains (1) summary
    pfam00046
    Location:102 → 155
    Homeobox; Homeobox domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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