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LOC102227571 single-minded homolog 1-like [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102227571, updated on 22-Oct-2023

Summary

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Gene symbol
LOC102227571
Gene description
single-minded homolog 1-like
See related
Ensembl:ENSXMAG00000019075
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
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Genomic context

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See LOC102227571 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 15 NC_036457.1 (8700299..8710792, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005373180.1 (18563..27098, complement)

Chromosome 15 - NC_036457.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102230755 Neighboring gene ripply transcriptional repressor 2 Neighboring gene melanocortin 2 receptor accessory protein 2 Neighboring gene cell migration-inducing and hyaluronan-binding protein-like Neighboring gene cartilage intermediate layer protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-minded homolog 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036457.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    8700299..8710792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005814862.2 → XP_005814919.1  single-minded homolog 1-like isoform X1

    UniProtKB/TrEMBL
    M4AXB9
    Related
    ENSXMAP00000019114.2, ENSXMAT00000019142.2
    Conserved Domains (6) summary
    smart00091
    Location:79 → 144
    PAS; PAS domain
    cd00083
    Location:2 → 52
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:229 → 328
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:79 → 141
    PAS; PAS fold
    pfam06621
    Location:356 → 663
    SIM_C; Single-minded protein C-terminus
    pfam08447
    Location:243 → 329
    PAS_3; PAS fold

  2. XM_023347317.1 → XP_023203085.1  single-minded homolog 1-like isoform X2

    UniProtKB/TrEMBL
    M4AXB9
    Conserved Domains (2) summary
    pfam06621
    Location:221 → 528
    SIM_C; Single-minded protein C-terminus
    pfam08447
    Location:108 → 194
    PAS_3; PAS fold
Nucleotide Protein Strain
Heading Accession and Version

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