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foxf2a forkhead box F2a [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102226978, updated on 10-Mar-2024

Summary

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Gene symbol
foxf2a
Gene description
forkhead box F2a
See related
Ensembl:ENSXMAG00000017028
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
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Genomic context

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See foxf2a in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 6 NC_036448.1 (16508773..16512114)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372185.1 (5165934..5168133)

Chromosome 6 - NC_036448.1Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 4a Neighboring gene forkhead box Q1a Neighboring gene forkhead box C1a Neighboring gene myosin light chain kinase family member 4-like Neighboring gene uncharacterized LOC111608950

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein F1-B-like; forkhead box protein F2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036448.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    16508773..16512114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005796111.2 → XP_005796168.1  forkhead box protein F2-like isoform X1

    UniProtKB/TrEMBL
    M4ARG7
    Related
    ENSXMAP00000017062.1, ENSXMAT00000017086.2
    Conserved Domains (1) summary
    smart00339
    Location:51 → 139
    FH; FORKHEAD

  2. XM_023335049.1 → XP_023190817.1  forkhead box protein F1-B-like isoform X2

    Conserved Domains (1) summary
    pfam00250
    Location:51 → 136
    Forkhead; Forkhead domain
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases