U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

foxf1 forkhead box F1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102220431, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
foxf1
Gene description
forkhead box F1
See related
Ensembl:ENSXMAG00000003079
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See foxf1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 4 NC_036446.1 (15342085..15345721)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372306.1 (200649..202732, complement)

Chromosome 4 - NC_036446.1Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 8 Neighboring gene uncharacterized LOC111608465 Neighboring gene methenyltetrahydrofolate synthetase domain containing Neighboring gene dysbindin domain containing 1 Neighboring gene AFG3-like protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
forkhead box protein F1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036446.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    15342085..15345721
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005804950.2 → XP_005805007.1  forkhead box protein F1

    UniProtKB/TrEMBL
    M3ZLJ0
    Related
    ENSXMAP00000003082.1, ENSXMAT00000003087.2
    Conserved Domains (1) summary
    cd20049
    Location:54 → 152
    FH_FOXF1; Forkhead (FH) domain found in Forkhead box protein F1 (FOXF1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.