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otpa orthopedia homeobox a [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102219227, updated on 10-Mar-2024

Summary

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Gene symbol
otpa
Gene description
orthopedia homeobox a
See related
Ensembl:ENSXMAG00000029861
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Also known as
otp
Orthologs
human zebrafish all
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Genomic context

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See otpa in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 8 NC_036450.1 (23285921..23291203)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372256.1 (813280..824375)

Chromosome 8 - NC_036450.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 3 subunit beta 1a Neighboring gene tubulin cofactor a Neighboring gene WD repeat domain 41 Neighboring gene phosphodiesterase 8B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein orthopedia

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036450.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    23285921..23291203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005802443.2 → XP_005802500.1  homeobox protein orthopedia isoform X1

    UniProtKB/TrEMBL
    A0A3B5QWJ2
    Related
    ENSXMAP00000034705.1, ENSXMAT00000022487.1
    Conserved Domains (2) summary
    pfam00046
    Location:129 → 177
    Homeobox; Homeobox domain
    pfam03826
    Location:321 → 338
    OAR; OAR domain

  2. XM_005802444.2 → XP_005802501.1  homeobox protein orthopedia isoform X2

    UniProtKB/TrEMBL
    M4AWL4
    Conserved Domains (2) summary
    pfam00046
    Location:116 → 164
    Homeobox; Homeobox domain
    pfam03826
    Location:308 → 325
    OAR; OAR domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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