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Hoxb13 homeobox B13 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101972553, updated on 8-Mar-2024

Summary

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Gene symbol
Hoxb13
Gene description
homeobox B13
Locus tag
H1C71_022081
See related
EnsemblRapid:ENSSTOG00015019034
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Hoxb13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405602.1 (24384231..24386567, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936490.1 (12688572..12690908)

NW_024405602.1Genomic Context describing neighboring genes Neighboring gene homeobox B9 Neighboring gene uncharacterized LOC120884109 Neighboring gene uncharacterized LOC120884108 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC120884530

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-B13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024405602.1 Reference HiC_Itri_2 Primary Assembly

    Range
    24384231..24386567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005321713.2 → XP_005321770.1  homeobox protein Hox-B13

    UniProtKB/TrEMBL
    I3MNU3
    Related
    ENSSTOP00015023446.1, ENSSTOT00015025550.1
    Conserved Domains (2) summary
    smart00389
    Location:216 → 272
    HOX; Homeodomain
    pfam12284
    Location:12 → 121
    HoxA13_N; Hox protein A13 N terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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