U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Mycn MYCN proto-oncogene, bHLH transcription factor [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101971112, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Mycn
Gene description
MYCN proto-oncogene, bHLH transcription factor
Locus tag
H1C71_035155
See related
EnsemblRapid:ENSSTOG00015003236
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Mycn in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024406292.1 (56215359..56221421)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936493.1 (14618176..14624201, complement)

NW_024406292.1Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 1 Neighboring gene uncharacterized LOC120884920 Neighboring gene uncharacterized LOC120884927 Neighboring gene uncharacterized LOC120885030 Neighboring gene CYFIP related Rac1 interactor A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
N-myc proto-oncogene protein
Names
v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024406292.1 Reference HiC_Itri_2 Primary Assembly

    Range
    56215359..56221421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021724664.2 → XP_021580339.1  N-myc proto-oncogene protein isoform X1

    UniProtKB/TrEMBL
    I3MIT6
    Related
    ENSSTOP00015003894.1, ENSSTOT00015004332.1
    Conserved Domains (2) summary
    cd11456
    Location:374 → 460
    bHLHzip_N-Myc_like; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in N-Myc and similar proteins
    pfam01056
    Location:10 → 368
    Myc_N; Myc amino-terminal region

  2. XM_013357364.3 → XP_013212818.1  N-myc proto-oncogene protein isoform X2

    Conserved Domains (2) summary
    cd11456
    Location:167 → 253
    bHLHzip_N-Myc_like; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in N-Myc and similar proteins
    pfam01056
    Location:66 → 161
    Myc_N; Myc amino-terminal region

  3. XM_040271324.1 → XP_040127258.1  N-myc proto-oncogene protein isoform X1

    UniProtKB/TrEMBL
    I3MIT6
    Conserved Domains (2) summary
    cd11456
    Location:374 → 460
    bHLHzip_N-Myc_like; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in N-Myc and similar proteins
    pfam01056
    Location:10 → 368
    Myc_N; Myc amino-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.