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Sox10 SRY-box transcription factor 10 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101969095, updated on 8-Mar-2024

Summary

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Gene symbol
Sox10
Gene description
SRY-box transcription factor 10
Locus tag
H1C71_012265
See related
EnsemblRapid:ENSSTOG00015013897
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Orthologs
human mouse all
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Genomic context

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See Sox10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024404945.1 (10163344..10174369)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936492.1 (3173770..3183423)

NW_024404945.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 8 Neighboring gene protein interacting with PRKCA 1 Neighboring gene RNA polymerase II, I and III subunit F Neighboring gene chromosome unknown C22orf23 homolog Neighboring gene MICAL like 1 Neighboring gene eukaryotic translation initiation factor 3 subunit L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in enteric nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peripheral nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-10
Names
SRY-box 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024404945.1 Reference HiC_Itri_2 Primary Assembly

    Range
    10163344..10174369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005322261.4 → XP_005322318.1  transcription factor SOX-10

    UniProtKB/TrEMBL
    I3MYB5
    Related
    ENSSTOP00015016990.1, ENSSTOT00015018623.1
    Conserved Domains (2) summary
    cd01388
    Location:103 → 173
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam12444
    Location:12 → 93
    Sox_N; Sox developmental protein N terminal
Nucleotide Protein
Heading Accession and Version

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