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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference ASM1176430v1.1 Primary Assembly
Genomic
-
NW_025421377.1 Reference ASM1176430v1.1 Primary Assembly
- Range
-
7738042..7870000 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_004775507.3 → XP_004775564.1 circadian locomoter output cycles protein kaput isoform X2
- UniProtKB/TrEMBL
-
A0A8U0NC03
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- cd00130
Location:275 → 373
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam13426
Location:119 → 220
- PAS_9; PAS domain
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
-
XM_004775509.3 → XP_004775566.1 circadian locomoter output cycles protein kaput isoform X3
- UniProtKB/TrEMBL
-
M3Y152
- Related
-
ENSMPUP00000005053.1
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- cd00130
Location:275 → 373
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam13426
Location:119 → 220
- PAS_9; PAS domain
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
-
XM_004775505.3 → XP_004775562.1 circadian locomoter output cycles protein kaput isoform X1
See identical proteins and their annotated locations for XP_004775562.1
- UniProtKB/TrEMBL
-
A0A8U0NC19
- Conserved Domains (4) summary
-
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cl41773
Location:554 → 786
- SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
-
XM_013047308.2 → XP_012902762.1 circadian locomoter output cycles protein kaput isoform X1
See identical proteins and their annotated locations for XP_012902762.1
- UniProtKB/TrEMBL
-
A0A8U0NC19
- Conserved Domains (4) summary
-
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cl41773
Location:554 → 786
- SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
-
XM_004775506.3 → XP_004775563.1 circadian locomoter output cycles protein kaput isoform X1
See identical proteins and their annotated locations for XP_004775563.1
- UniProtKB/TrEMBL
-
A0A8U0NC19
- Conserved Domains (4) summary
-
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cl41773
Location:554 → 786
- SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
-
XM_045079772.1 → XP_044935707.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/TrEMBL
-
A0A8U0NC19
- Conserved Domains (4) summary
-
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cl41773
Location:554 → 786
- SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
-
XM_045079773.1 → XP_044935708.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/TrEMBL
-
A0A8U0NC19
- Conserved Domains (4) summary
-
- cd19734
Location:29 → 89
- bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam14598
Location:274 → 377
- PAS_11; PAS domain
- cl41773
Location:554 → 786
- SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
-
XM_045079774.1 → XP_044935709.1 circadian locomoter output cycles protein kaput isoform X4
- UniProtKB/TrEMBL
-
A0A8U0V2M2
- Conserved Domains (3) summary
-
- cd00130
Location:59 → 157
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam08447
Location:227 → 314
- PAS_3; PAS fold
- cl00081
Location:1 → 46
- bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
-
XM_045079775.1 → XP_044935710.1 circadian locomoter output cycles protein kaput isoform X5
- UniProtKB/TrEMBL
-
A0A8U0S3K1
- Conserved Domains (2) summary
-
- cd00130
Location:3 → 91
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam08447
Location:161 → 248
- PAS_3; PAS fold