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CLOCK clock circadian regulator [ Mustela putorius furo (domestic ferret) ]

Gene ID: 101674500, updated on 8-Mar-2024

Summary

Gene symbol
CLOCK
Gene description
clock circadian regulator
See related
Ensembl:ENSMPUG00000005091
Gene type
protein coding
RefSeq status
MODEL
Organism
Mustela putorius furo (sub-species: furo)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Mustelinae; Mustela
Orthologs
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Genomic context

See CLOCK in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current ASM1176430v1.1 (GCF_011764305.1) Unplaced Scaffold NW_025421377.1 (7738042..7870000, complement)
101 previous assembly MusPutFur1.0 (GCF_000215625.1) Unplaced Scaffold NW_004569356.1 (2473735..2608618)

NW_025421377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123392032 Neighboring gene transmembrane protein 165 Neighboring gene U4 spliceosomal RNA Neighboring gene U4 spliceosomal RNA Neighboring gene phosducin like 2 Neighboring gene neuromedin U

Genomic regions, transcripts, and products

General protein information

Preferred Names
circadian locomoter output cycles protein kaput
Names
clock-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mustela putorius furo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1176430v1.1 Primary Assembly

Genomic

  1. NW_025421377.1 Reference ASM1176430v1.1 Primary Assembly

    Range
    7738042..7870000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004775507.3XP_004775564.1  circadian locomoter output cycles protein kaput isoform X2

    UniProtKB/TrEMBL
    A0A8U0NC03
    Conserved Domains (4) summary
    cd00083
    Location:3286
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:275373
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam13426
    Location:119220
    PAS_9; PAS domain
    pfam14598
    Location:274377
    PAS_11; PAS domain
  2. XM_004775509.3XP_004775566.1  circadian locomoter output cycles protein kaput isoform X3

    UniProtKB/TrEMBL
    M3Y152
    Related
    ENSMPUP00000005053.1
    Conserved Domains (4) summary
    cd00083
    Location:3286
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:275373
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam13426
    Location:119220
    PAS_9; PAS domain
    pfam14598
    Location:274377
    PAS_11; PAS domain
  3. XM_004775505.3XP_004775562.1  circadian locomoter output cycles protein kaput isoform X1

    See identical proteins and their annotated locations for XP_004775562.1

    UniProtKB/TrEMBL
    A0A8U0NC19
    Conserved Domains (4) summary
    cd19734
    Location:2989
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109175
    PAS; PAS fold
    pfam14598
    Location:274377
    PAS_11; PAS domain
    cl41773
    Location:554786
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  4. XM_013047308.2XP_012902762.1  circadian locomoter output cycles protein kaput isoform X1

    See identical proteins and their annotated locations for XP_012902762.1

    UniProtKB/TrEMBL
    A0A8U0NC19
    Conserved Domains (4) summary
    cd19734
    Location:2989
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109175
    PAS; PAS fold
    pfam14598
    Location:274377
    PAS_11; PAS domain
    cl41773
    Location:554786
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  5. XM_004775506.3XP_004775563.1  circadian locomoter output cycles protein kaput isoform X1

    See identical proteins and their annotated locations for XP_004775563.1

    UniProtKB/TrEMBL
    A0A8U0NC19
    Conserved Domains (4) summary
    cd19734
    Location:2989
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109175
    PAS; PAS fold
    pfam14598
    Location:274377
    PAS_11; PAS domain
    cl41773
    Location:554786
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  6. XM_045079772.1XP_044935707.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8U0NC19
    Conserved Domains (4) summary
    cd19734
    Location:2989
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109175
    PAS; PAS fold
    pfam14598
    Location:274377
    PAS_11; PAS domain
    cl41773
    Location:554786
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  7. XM_045079773.1XP_044935708.1  circadian locomoter output cycles protein kaput isoform X1

    UniProtKB/TrEMBL
    A0A8U0NC19
    Conserved Domains (4) summary
    cd19734
    Location:2989
    bHLH-PAS_CLOCK; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Circadian locomotor output cycles protein kaput (CLOCK) and similar proteins
    pfam00989
    Location:109175
    PAS; PAS fold
    pfam14598
    Location:274377
    PAS_11; PAS domain
    cl41773
    Location:554786
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
  8. XM_045079774.1XP_044935709.1  circadian locomoter output cycles protein kaput isoform X4

    UniProtKB/TrEMBL
    A0A8U0V2M2
    Conserved Domains (3) summary
    cd00130
    Location:59157
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:227314
    PAS_3; PAS fold
    cl00081
    Location:146
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
  9. XM_045079775.1XP_044935710.1  circadian locomoter output cycles protein kaput isoform X5

    UniProtKB/TrEMBL
    A0A8U0S3K1
    Conserved Domains (2) summary
    cd00130
    Location:391
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:161248
    PAS_3; PAS fold