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nkx3-1 NK3 homeobox 1 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101167461, updated on 8-Mar-2024

Summary

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Gene symbol
nkx3-1
Gene description
NK3 homeobox 1
See related
EnsemblRapid:ENSORLG00000027421
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See nkx3-1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 9 NC_019867.2 (16768109..16769120, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 9 NC_019867.1 (16535895..16536884, complement)

Chromosome 9 - NC_019867.2Genomic Context describing neighboring genes Neighboring gene ectonucleoside triphosphate diphosphohydrolase 4 Neighboring gene solute carrier family 25 member 37 Neighboring gene NK2 transcription factor related 7 Neighboring gene stanniocalcin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Nkx-3.1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019867.2 Reference ASM223467v1 Primary Assembly

    Range
    16768109..16769120 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004072474.4 → XP_004072522.1  homeobox protein Nkx-3.1-like

    UniProtKB/TrEMBL
    A0A3B3HVH9, A0A3P9ILF3
    Related
    ENSORLP00000035844.1, ENSORLT00000028373.2
    Conserved Domains (1) summary
    pfam00046
    Location:80 → 133
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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