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EED embryonic ectoderm development [ Gorilla gorilla gorilla (western lowland gorilla) ]

Gene ID: 101138277, updated on 1-Oct-2024

Summary

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Gene symbol
EED
Gene description
embryonic ectoderm development
See related
Ensembl:ENSGGOG00000007517
Gene type
protein coding
RefSeq status
MODEL
Organism
Gorilla gorilla gorilla (sub-species: gorilla)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
Orthologs
human mouse all
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Genomic context

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See EED in Genome Data Viewer
Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 9 NC_073233.2 (94141776..94179675)
RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 11 NC_073235.1 (96310893..96348751)

Chromosome 9 - NC_073233.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like Neighboring gene protein SET-like Neighboring gene heat shock protein nuclear import factor hikeshi

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESC/E(Z) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycomb protein EED

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

Genomic

  1. NC_073233.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Range
    94141776..94179675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004051935.4 → XP_004051983.1  polycomb protein EED isoform X1

    See identical proteins and their annotated locations for XP_004051983.1

    UniProtKB/TrEMBL
    G3QX31
    Related
    ENSGGOP00000007362.2
    Conserved Domains (2) summary
    sd00039
    Location:96 → 140
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:150 → 463
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_004051934.4 → XP_004051982.1  polycomb protein EED isoform X2

    See identical proteins and their annotated locations for XP_004051982.1

    UniProtKB/TrEMBL
    G3RT87
    Related
    ENSGGOP00000019012.2
    Conserved Domains (2) summary
    sd00039
    Location:96 → 140
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:150 → 438
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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