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HOXA1 homeobox A1 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101048884, updated on 8-Mar-2024

Summary

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Gene symbol
HOXA1
Gene description
homeobox A1
See related
EnsemblRapid:ENSSBOG00000022017
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See HOXA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100925.1 (5106674..5109430)

NW_024100925.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101044542 Neighboring gene homeobox A2 Neighboring gene tropomyosin alpha-3 chain-like Neighboring gene short transmembrane mitochondrial protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100925 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-A1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100925.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    5106674..5109430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003935150.2 → XP_003935199.1  homeobox protein Hox-A1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6SSH2
    Related
    ENSSBOP00000010328.2, ENSSBOT00000027103.2
    Conserved Domains (2) summary
    COG5576
    Location:174 → 284
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:231 → 283
    Homeobox; Homeobox domain

  2. XM_010345696.1 → XP_010343998.1  homeobox protein Hox-A1 isoform X2

    UniProtKB/TrEMBL
    A0A2K6SSF7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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