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SALL2 spalt like transcription factor 2 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101048597, updated on 8-Mar-2024

Summary

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Gene symbol
SALL2
Gene description
spalt like transcription factor 2
See related
EnsemblRapid:ENSSBOG00000028539
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See SALL2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100921.1 (63715786..63721098)

NW_024100921.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 10G2 Neighboring gene olfactory receptor 10G3 Neighboring gene methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit Neighboring gene TOX high mobility group box family member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100921 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sal-like protein 2
Names
sal-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100921.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    63715786..63721098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010335075.2 → XP_010333377.1  sal-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K6TWS7, A0A2K6TWT3
    Related
    ENSSBOP00000024125.1, ENSSBOT00000040984.2
    Conserved Domains (3) summary
    sd00017
    Location:375 → 395
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:692 → 713
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:387 → 412
    zf-H2C2_2; Zinc-finger double domain

  2. XM_010335077.2 → XP_010333379.1  sal-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A2K6TWT3
    Conserved Domains (4) summary
    sd00017
    Location:375 → 395
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:913 → 933
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:692 → 713
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:387 → 412
    zf-H2C2_2; Zinc-finger double domain

  3. XM_010335076.2 → XP_010333378.1  sal-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A2K6TWT3
    Conserved Domains (3) summary
    sd00017
    Location:335 → 355
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:652 → 673
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:347 → 372
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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