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LOC101046830 zinc finger protein 235 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101046830, updated on 16-Nov-2023

Summary

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Gene symbol
LOC101046830
Gene description
zinc finger protein 235
See related
EnsemblRapid:ENSSBOG00000046681
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Also known as
ZNF235
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Genomic context

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See LOC101046830 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100963.1 (42835824..42857743, complement)

NW_024100963.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 226 Neighboring gene zinc finger protein 227 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like Neighboring gene zinc finger protein 112 Neighboring gene zinc finger protein 285

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100963 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 235

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100963.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    42835824..42857743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010332515.2 → XP_010330817.1  zinc finger protein 235

    See identical proteins and their annotated locations for XP_010330817.1

    UniProtKB/TrEMBL
    A0A2K6TV79
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:320 → 661
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:376 → 396
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:612 → 637
    zf-H2C2_2; Zinc-finger double domain

  2. XM_010332517.2 → XP_010330819.1  zinc finger protein 235

    See identical proteins and their annotated locations for XP_010330819.1

    UniProtKB/TrEMBL
    A0A2K6TV79
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:320 → 661
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:376 → 396
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:612 → 637
    zf-H2C2_2; Zinc-finger double domain

  3. XM_010332516.2 → XP_010330818.1  zinc finger protein 235

    See identical proteins and their annotated locations for XP_010330818.1

    UniProtKB/TrEMBL
    A0A2K6TV79
    Related
    ENSSBOP00000042935.1, ENSSBOT00000064835.1
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:320 → 661
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:376 → 396
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:612 → 637
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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