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SHOX2 SHOX homeobox 2 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101045659, updated on 8-Mar-2024

Summary

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Gene symbol
SHOX2
Gene description
SHOX homeobox 2
See related
EnsemblRapid:ENSSBOG00000041674
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See SHOX2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100937.1 (20894223..20902993, complement)

NW_024100937.1Genomic Context describing neighboring genes Neighboring gene ventricular zone expressed PH domain containing 1 Neighboring gene pentraxin 3 Neighboring gene U1 spliceosomal RNA Neighboring gene arginine and serine rich coiled-coil 1 Neighboring gene nucleosome assembly protein 1-like 1 Neighboring gene 60S ribosomal protein L15-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100937 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short stature homeobox protein 2
Names
short stature homeobox 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100937.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    20894223..20902993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039480293.1 → XP_039336227.1  short stature homeobox protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A2K6V218
    Related
    ENSSBOP00000046122.1, ENSSBOT00000074610.1
    Conserved Domains (2) summary
    pfam00046
    Location:143 → 197
    Homeobox; Homeobox domain
    pfam03826
    Location:299 → 315
    OAR; OAR domain

  2. XM_039480292.1 → XP_039336226.1  short stature homeobox protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A2K6V218
    Conserved Domains (2) summary
    pfam00046
    Location:143 → 197
    Homeobox; Homeobox domain
    pfam03826
    Location:311 → 327
    OAR; OAR domain

  3. XM_039480291.1 → XP_039336225.1  short stature homeobox protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K6V1Y3
    Conserved Domains (2) summary
    pfam00046
    Location:169 → 223
    Homeobox; Homeobox domain
    pfam03826
    Location:337 → 353
    OAR; OAR domain
Nucleotide Protein
Heading Accession and Version

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