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ASCL4 achaete-scute family bHLH transcription factor 4 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101039071, updated on 8-Mar-2024

Summary

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Gene symbol
ASCL4
Gene description
achaete-scute family bHLH transcription factor 4
See related
EnsemblRapid:ENSSBOG00000044643
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See ASCL4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100924.1 (25335985..25338185, complement)

NW_024100924.1Genomic Context describing neighboring genes Neighboring gene ret finger protein-like 3 Neighboring gene basic leucine zipper and W2 domain-containing protein 1-like Neighboring gene heterogeneous nuclear ribonucleoproteins C1/C2-like Neighboring gene PR/SET domain 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100924 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
achaete-scute homolog 4
Names
achaete-scute complex homolog 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100924.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    25335985..25338185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003932298.2 → XP_003932347.1  achaete-scute homolog 4

    Related
    ENSSBOP00000041788.1, ENSSBOT00000073465.1
    Conserved Domains (1) summary
    smart00353
    Location:89 → 130
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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