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VAX1 ventral anterior homeobox 1 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101034790, updated on 8-Mar-2024

Summary

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Gene symbol
VAX1
Gene description
ventral anterior homeobox 1
See related
EnsemblRapid:ENSSBOG00000047651
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See VAX1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100962.1 (36364571..36369498, complement)

NW_024100962.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120362551 Neighboring gene enolase 4 Neighboring gene shootin 1 Neighboring gene potassium two pore domain channel subfamily K member 18 Neighboring gene solute carrier family 18 member A2 Neighboring gene PDZ domain containing 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100962 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ventral anterior homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100962.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    36364571..36369498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039465293.1 → XP_039321227.1  ventral anterior homeobox 1

    UniProtKB/TrEMBL
    A0A2K6U7Y2
    Related
    ENSSBOP00000047980.1, ENSSBOT00000076772.1
    Conserved Domains (2) summary
    COG5576
    Location:66 → 184
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:103 → 157
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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