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IRX4 iroquois homeobox 4 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101031799, updated on 8-Mar-2024

Summary

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Gene symbol
IRX4
Gene description
iroquois homeobox 4
See related
EnsemblRapid:ENSSBOG00000035465
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See IRX4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100917.1 (1761933..1771547, complement)

NW_024100917.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L36 Neighboring gene NADH:ubiquinone oxidoreductase subunit S6 Neighboring gene uncharacterized LOC104652099 Neighboring gene regulator of G-protein signaling 2-like Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100917 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iroquois-class homeodomain protein IRX-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100917.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    1761933..1771547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039472226.1 → XP_039328160.1  iroquois-class homeodomain protein IRX-4 isoform X1

    UniProtKB/TrEMBL
    A0A2K6V3W5
    Conserved Domains (1) summary
    pfam05920
    Location:160 → 199
    Homeobox_KN; Homeobox KN domain

  2. XM_003932534.3 → XP_003932583.2  iroquois-class homeodomain protein IRX-4 isoform X1

    UniProtKB/TrEMBL
    A0A2K6V3W5
    Related
    ENSSBOP00000038805.2, ENSSBOT00000055760.2
    Conserved Domains (1) summary
    pfam05920
    Location:160 → 199
    Homeobox_KN; Homeobox KN domain

  3. XM_039472229.1 → XP_039328163.1  iroquois-class homeodomain protein IRX-4 isoform X2

    UniProtKB/TrEMBL
    A0A2K6V3W5
    Conserved Domains (2) summary
    COG5576
    Location:149 → 231
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam05920
    Location:186 → 225
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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