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BHLHE40 basic helix-loop-helix family member e40 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

Gene ID: 101028697, updated on 8-Mar-2024

Summary

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Gene symbol
BHLHE40
Gene description
basic helix-loop-helix family member e40
See related
EnsemblRapid:ENSSBOG00000043869
Gene type
protein coding
RefSeq status
MODEL
Organism
Saimiri boliviensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
Orthologs
human mouse all
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Genomic context

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See BHLHE40 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100933.1 (23613706..23619461, complement)

NW_024100933.1Genomic Context describing neighboring genes Neighboring gene ER degradation enhancing alpha-mannosidase like protein 1 Neighboring gene ARF like GTPase 8B Neighboring gene small nucleolar RNA U13 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024100933 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
class E basic helix-loop-helix protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Sbol_2.0 Primary Assembly

Genomic

  1. NW_024100933.1 Reference BCM_Sbol_2.0 Primary Assembly

    Range
    23613706..23619461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003927124.3 → XP_003927173.1  class E basic helix-loop-helix protein 40

    See identical proteins and their annotated locations for XP_003927173.1

    UniProtKB/TrEMBL
    A0A2K6TJR9, A0A2K6TJU3
    Related
    ENSSBOP00000042815.1, ENSSBOT00000076095.1
    Conserved Domains (2) summary
    smart00511
    Location:140 → 184
    ORANGE; Orange domain
    cd00083
    Location:50 → 111
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
Nucleotide Protein
Heading Accession and Version

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