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OTX2 orthodenticle homeobox 2 [ Papio anubis (olive baboon) ]

Gene ID: 101007811, updated on 8-Mar-2024

Summary

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Gene symbol
OTX2
Gene description
orthodenticle homeobox 2
See related
Ensembl:ENSPANG00000045284
Gene type
protein coding
RefSeq status
MODEL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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See OTX2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 7 NC_044982.1 (49702107..49712170)
103 previous assembly Panu_3.0 (GCF_000264685.3) 7 NC_018158.2 (113772203..113783075, complement)

Chromosome 7 - NC_044982.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103886268 Neighboring gene U6 spliceosomal RNA Neighboring gene 60S ribosomal protein L21-like Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein OTX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044982.1 Reference Panubis1.0 Primary Assembly

    Range
    49702107..49712170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003901851.5 → XP_003901900.1  homeobox protein OTX2

    See identical proteins and their annotated locations for XP_003901900.1

    UniProtKB/TrEMBL
    A0A096NVA6
    Related
    ENSPANP00000049486.1, ENSPANT00000070222.1
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 94
    Homeobox; Homeobox domain
    pfam03529
    Location:155 → 234
    TF_Otx; Otx1 transcription factor

  2. XM_003901850.5 → XP_003901899.1  homeobox protein OTX2

    See identical proteins and their annotated locations for XP_003901899.1

    UniProtKB/TrEMBL
    A0A096NVA6
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 94
    Homeobox; Homeobox domain
    pfam03529
    Location:155 → 234
    TF_Otx; Otx1 transcription factor

  3. XM_031668084.1 → XP_031523944.1  homeobox protein OTX2

    UniProtKB/TrEMBL
    A0A096NVA6
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 94
    Homeobox; Homeobox domain
    pfam03529
    Location:155 → 234
    TF_Otx; Otx1 transcription factor
Nucleotide Protein
Heading Accession and Version

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