U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RORA RAR related orphan receptor A [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100989776, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
RORA
Gene description
RAR related orphan receptor A
See related
Ensembl:ENSPPAG00000038168
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RORA in Genome Data Viewer
Location:
chromosome: 16
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 16 NC_073265.2 (49756431..50500133, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 15 NC_073264.1 (53939419..54677888, complement)

Chromosome 16 - NC_073265.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS10-like Neighboring gene uncharacterized LOC103783214 Neighboring gene interactor of little elongation complex ELL subunit 2 Neighboring gene uncharacterized LOC130540834 Neighboring gene uncharacterized LOC134729078 Neighboring gene uncharacterized LOC130540854 Neighboring gene vacuolar protein sorting 13 homolog C Neighboring gene ubiquitin-conjugating enzyme E2 K-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxysterol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear receptor ROR-alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073265.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    49756431..50500133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034938859.3 → XP_034794750.1  nuclear receptor ROR-alpha isoform X2

    UniProtKB/TrEMBL
    A0A2R9BLY3
    Conserved Domains (2) summary
    cd06939
    Location:272 → 511
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:66 → 160
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

  2. XM_034938861.3 → XP_034794752.1  nuclear receptor ROR-alpha isoform X4

    UniProtKB/TrEMBL
    A0A2R9BLY3
    Conserved Domains (2) summary
    cd06939
    Location:135 → 374
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cl02596
    Location:1 → 23
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  3. XM_063596697.1 → XP_063452767.1  nuclear receptor ROR-alpha isoform X1

  4. XM_034938860.4 → XP_034794751.1  nuclear receptor ROR-alpha isoform X3

    UniProtKB/TrEMBL
    A0A2R9BLY3
    Conserved Domains (2) summary
    cd06939
    Location:217 → 456
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:11 → 105
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.