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PKNOX1 PBX/knotted 1 homeobox 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100975476, updated on 10-Oct-2024

Summary

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Gene symbol
PKNOX1
Gene description
PBX/knotted 1 homeobox 1
See related
Ensembl:ENSPPAG00000027586
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See PKNOX1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 22 NC_073271.2 (39031280..39090577)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 21 NC_073270.1 (33883591..33943402)

Chromosome 22 - NC_073271.2Genomic Context describing neighboring genes Neighboring gene endogenous retrovirus group 48 member 1, envelope Neighboring gene uncharacterized LOC134729754 Neighboring gene cystathionine beta-synthase Neighboring gene U2 small nuclear RNA auxiliary factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein PKNOX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073271.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    39031280..39090577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034948208.3 → XP_034804099.1  homeobox protein PKNOX1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZY31
    Conserved Domains (2) summary
    pfam05920
    Location:277 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 165
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  2. XM_034948214.3 → XP_034804105.1  homeobox protein PKNOX1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8ZY31
    Conserved Domains (2) summary
    pfam05920
    Location:276 → 315
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 165
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  3. XM_034948212.3 → XP_034804103.1  homeobox protein PKNOX1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZY31
    Conserved Domains (2) summary
    pfam05920
    Location:277 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 165
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  4. XM_034948210.3 → XP_034804101.1  homeobox protein PKNOX1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZY31
    Conserved Domains (2) summary
    pfam05920
    Location:277 → 316
    Homeobox_KN; Homeobox KN domain
    pfam16493
    Location:80 → 165
    Meis_PKNOX_N; N-terminal of Homeobox Meis and PKNOX1

  5. XM_063601420.1 → XP_063457490.1  homeobox protein PKNOX1 isoform X1

  6. XM_063601421.1 → XP_063457491.1  homeobox protein PKNOX1 isoform X2

  7. XM_063601422.1 → XP_063457492.1  homeobox protein PKNOX1 isoform X2

  8. XM_063601419.1 → XP_063457489.1  homeobox protein PKNOX1 isoform X1

Nucleotide Protein
Heading Accession and Version

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