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LHX3 LIM homeobox 3 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100973066, updated on 8-Mar-2024

Summary

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Gene symbol
LHX3
Gene description
LIM homeobox 3
See related
Ensembl:ENSPPAG00000031746
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See LHX3 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 11 NC_073260.2 (3179178..3188054)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 9 NC_073258.1 (3181513..3190389)

Chromosome 11 - NC_073260.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129398709 Neighboring gene quiescin sulfhydryl oxidase 2 Neighboring gene transmembrane protein 250 Neighboring gene NACC family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM/homeobox protein Lhx3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073260.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    3179178..3188054
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034929787.3 → XP_034785678.2  LIM/homeobox protein Lhx3 isoform X2

  2. XM_034929786.3 → XP_034785677.2  LIM/homeobox protein Lhx3 isoform X1

  3. XM_034929789.4 → XP_034785680.2  LIM/homeobox protein Lhx3 isoform X4

  4. XM_034929788.3 → XP_034785679.2  LIM/homeobox protein Lhx3 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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