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CSDE1 cold shock domain containing E1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100968628, updated on 6-Jun-2024

Summary

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Gene symbol
CSDE1
Gene description
cold shock domain containing E1
See related
Ensembl:ENSPPAG00000025861
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 1 NC_073249.2 (107379136..107420513, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 1 NC_073249.1 (106973319..107014750, complement)

Chromosome 1 - NC_073249.2Genomic Context describing neighboring genes Neighboring gene adenosine monophosphate deaminase 1 Neighboring gene NRAS proto-oncogene, GTPase Neighboring gene suppressor of IKBKE 1 Neighboring gene bile acid receptor-like Neighboring gene synaptonemal complex protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cold shock domain-containing protein E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073249.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    107379136..107420513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003805637.5 → XP_003805685.1  cold shock domain-containing protein E1 isoform X3

    See identical proteins and their annotated locations for XP_003805685.1

    UniProtKB/TrEMBL
    A0A2R8ZW19
    Conserved Domains (3) summary
    smart00357
    Location:350 → 413
    CSP; Cold shock protein domain
    pfam00313
    Location:186 → 248
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:756 → 788
    SUZ-C; SUZ-C motif

  2. XM_003805636.5 → XP_003805684.1  cold shock domain-containing protein E1 isoform X5

    See identical proteins and their annotated locations for XP_003805684.1

    UniProtKB/TrEMBL
    A0A2R8ZT70, A0A2R8ZW19
    Related
    ENSPPAP00000007078.1
    Conserved Domains (4) summary
    smart00357
    Location:319 → 382
    CSP; Cold shock protein domain
    pfam00313
    Location:155 → 217
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:725 → 757
    SUZ-C; SUZ-C motif
    cl09927
    Location:26 → 90
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  3. XM_003805639.5 → XP_003805687.1  cold shock domain-containing protein E1 isoform X5

    See identical proteins and their annotated locations for XP_003805687.1

    UniProtKB/TrEMBL
    A0A2R8ZT70, A0A2R8ZW19
    Related
    ENSPPAP00000007089.1
    Conserved Domains (4) summary
    smart00357
    Location:319 → 382
    CSP; Cold shock protein domain
    pfam00313
    Location:155 → 217
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:725 → 757
    SUZ-C; SUZ-C motif
    cl09927
    Location:26 → 90
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  4. XM_055114290.2 → XP_054970265.1  cold shock domain-containing protein E1 isoform X7

    UniProtKB/TrEMBL
    A0A2R8ZW19

  5. XM_063599287.1 → XP_063455357.1  cold shock domain-containing protein E1 isoform X12

    UniProtKB/TrEMBL
    A0A2R8ZW19

  6. XM_055114291.2 → XP_054970266.1  cold shock domain-containing protein E1 isoform X9

    UniProtKB/TrEMBL
    A0A2R8ZW19

  7. XM_063599285.1 → XP_063455355.1  cold shock domain-containing protein E1 isoform X11

    UniProtKB/TrEMBL
    A0A2R8ZW19

  8. XM_003805641.5 → XP_003805689.1  cold shock domain-containing protein E1 isoform X3

    See identical proteins and their annotated locations for XP_003805689.1

    UniProtKB/TrEMBL
    A0A2R8ZW19
    Conserved Domains (3) summary
    smart00357
    Location:350 → 413
    CSP; Cold shock protein domain
    pfam00313
    Location:186 → 248
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:756 → 788
    SUZ-C; SUZ-C motif

  9. XM_063599288.1 → XP_063455358.1  cold shock domain-containing protein E1 isoform X12

    UniProtKB/TrEMBL
    A0A2R8ZW19

  10. XM_055114287.2 → XP_054970262.1  cold shock domain-containing protein E1 isoform X5

    UniProtKB/TrEMBL
    A0A2R8ZT70, A0A2R8ZW19

  11. XM_055114280.2 → XP_054970255.1  cold shock domain-containing protein E1 isoform X3

    UniProtKB/TrEMBL
    A0A2R8ZW19

  12. XM_055114296.2 → XP_054970271.1  cold shock domain-containing protein E1 isoform X9

    UniProtKB/TrEMBL
    A0A2R8ZW19

  13. XM_063599289.1 → XP_063455359.1  cold shock domain-containing protein E1 isoform X12

    UniProtKB/TrEMBL
    A0A2R8ZW19

  14. XM_055114292.2 → XP_054970267.1  cold shock domain-containing protein E1 isoform X9

    UniProtKB/TrEMBL
    A0A2R8ZW19

  15. XM_055114276.2 → XP_054970251.1  cold shock domain-containing protein E1 isoform X2

    UniProtKB/TrEMBL
    A0A2R8ZQ63, A0A2R8ZW19

  16. XM_055114273.2 → XP_054970248.1  cold shock domain-containing protein E1 isoform X1

    UniProtKB/TrEMBL
    A0A2R8ZW03, A0A2R8ZW19

  17. XM_063599277.1 → XP_063455347.1  cold shock domain-containing protein E1 isoform X10

    UniProtKB/TrEMBL
    A0A2R8ZW19

  18. XM_055114289.2 → XP_054970264.1  cold shock domain-containing protein E1 isoform X6

    UniProtKB/TrEMBL
    A0A2R8ZW19

  19. XM_063599275.1 → XP_063455345.1  cold shock domain-containing protein E1 isoform X8

    UniProtKB/TrEMBL
    A0A2R8ZW19

  20. XM_034930072.3 → XP_034785963.1  cold shock domain-containing protein E1 isoform X4

    UniProtKB/TrEMBL
    A0A2R8ZW19
    Conserved Domains (2) summary
    pfam00313
    Location:232 → 294
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:755 → 787
    SUZ-C; SUZ-C motif
Nucleotide Protein
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