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VAX1 ventral anterior homeobox 1 [ Pan paniscus (pygmy chimpanzee) ]

Gene ID: 100967266, updated on 8-Mar-2024

Summary

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Gene symbol
VAX1
Gene description
ventral anterior homeobox 1
See related
Ensembl:ENSPPAG00000029176
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan paniscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See VAX1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 8 NC_073257.2 (129000474..129007775, complement)
RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 10 NC_073259.1 (129007153..129013113, complement)

Chromosome 8 - NC_073257.2Genomic Context describing neighboring genes Neighboring gene heat shock protein family A (Hsp70) member 12A Neighboring gene large ribosomal subunit protein uL18-like Neighboring gene enolase 4 Neighboring gene shootin 1 Neighboring gene potassium two pore domain channel subfamily K member 18 Neighboring gene solute carrier family 18 member A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ventral anterior homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

Genomic

  1. NC_073257.2 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Range
    129000474..129007775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003825629.4 → XP_003825677.1  ventral anterior homeobox 1 isoform X2

    See identical proteins and their annotated locations for XP_003825677.1

    UniProtKB/TrEMBL
    A0A2R9A8I6
    Related
    ENSPPAP00000011950.1
    Conserved Domains (1) summary
    pfam00046
    Location:103 → 143
    Homeobox; Homeobox domain

  2. XM_034931583.2 → XP_034787474.1  ventral anterior homeobox 1 isoform X1

    Conserved Domains (2) summary
    COG5576
    Location:66 → 184
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:103 → 157
    Homeobox; Homeobox domain
Nucleotide Protein
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