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CNOT1 CCR4-NOT transcription complex subunit 1 [ Otolemur garnettii (small-eared galago) ]

Gene ID: 100951884, updated on 8-Mar-2024

Summary

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Gene symbol
CNOT1
Gene description
CCR4-NOT transcription complex subunit 1
See related
Ensembl:ENSOGAG00000000543
Gene type
protein coding
RefSeq status
MODEL
Organism
Otolemur garnettii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lorisiformes; Galagidae; Otolemur
Orthologs
human mouse all
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Genomic context

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See CNOT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
49
Annotation release Status Assembly Chr Location
102 current OtoGar3 (GCF_000181295.1) Unplaced Scaffold NW_003852453.1 (10641987..10761771, complement)

NW_003852453.1Genomic Context describing neighboring genes Neighboring gene NDRG family member 4 Neighboring gene U6 spliceosomal RNA Neighboring gene SET domain containing 6, protein lysine methyltransferase Neighboring gene small nucleolar RNA SNORA46 Neighboring gene small nucleolar RNA SNORA50 Neighboring gene U6 spliceosomal RNA Neighboring gene thymosin beta-4 pseudogene Neighboring gene solute carrier family 38 member 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003852453 Unplaced Scaffold Reference OtoGar3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CCR4-NOT transcription complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Otolemur garnettii Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OtoGar3

Genomic

  1. NW_003852453.1 Reference OtoGar3

    Range
    10641987..10761771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023514784.1 → XP_023370552.1  CCR4-NOT transcription complex subunit 1 isoform X5

    Conserved Domains (2) summary
    pfam16418
    Location:500 → 650
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat
    cl26288
    Location:839 → 2368
    Not1; CCR4-Not complex component, Not1

  2. XM_023514782.1 → XP_023370550.1  CCR4-NOT transcription complex subunit 1 isoform X2

    Conserved Domains (2) summary
    pfam16418
    Location:500 → 650
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat
    cl26288
    Location:839 → 2375
    Not1; CCR4-Not complex component, Not1

  3. XM_012806839.2 → XP_012662293.1  CCR4-NOT transcription complex subunit 1 isoform X6

    Conserved Domains (5) summary
    pfam04054
    Location:1993 → 2348
    Not1; CCR4-Not complex component, Not1
    pfam12842
    Location:1384 → 1529
    DUF3819; Domain of unknown function (DUF3819)
    pfam16415
    Location:1083 → 1307
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:815 → 999
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
    pfam16418
    Location:500 → 656
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  4. XM_023514783.1 → XP_023370551.1  CCR4-NOT transcription complex subunit 1 isoform X3

    Conserved Domains (2) summary
    pfam16418
    Location:500 → 650
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat
    cl26288
    Location:835 → 2371
    Not1; CCR4-Not complex component, Not1

  5. XM_012806838.2 → XP_012662292.1  CCR4-NOT transcription complex subunit 1 isoform X4

    UniProtKB/TrEMBL
    H0WGN3
    Related
    ENSOGAP00000000491.2, ENSOGAT00000000548.2
    Conserved Domains (5) summary
    pfam04054
    Location:1998 → 2353
    Not1; CCR4-Not complex component, Not1
    pfam12842
    Location:1389 → 1534
    DUF3819; Domain of unknown function (DUF3819)
    pfam16415
    Location:1088 → 1312
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:815 → 1004
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
    pfam16418
    Location:500 → 656
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat

  6. XM_012806837.2 → XP_012662291.1  CCR4-NOT transcription complex subunit 1 isoform X1

    Conserved Domains (5) summary
    pfam04054
    Location:2005 → 2360
    Not1; CCR4-Not complex component, Not1
    pfam12842
    Location:1389 → 1534
    DUF3819; Domain of unknown function (DUF3819)
    pfam16415
    Location:1088 → 1312
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:815 → 1004
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
    pfam16418
    Location:500 → 656
    CNOT1_HEAT; CCR4-NOT transcription complex subunit 1 HEAT repeat
Nucleotide Protein
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