U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100883052 transcription initiation factor TFIID subunit 10-like [ Megachile rotundata (alfalfa leafcutting bee) ]

Gene ID: 100883052, updated on 1-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100883052
Gene description
transcription initiation factor TFIID subunit 10-like
See related
EnsemblRapid:LOC100883052
Gene type
protein coding
RefSeq status
MODEL
Organism
Megachile rotundata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
Orthologs
honey bee all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100883052 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797109.1 (1351419..1352591)

NW_003797109.1Genomic Context describing neighboring genes Neighboring gene lipase 3-like Neighboring gene pancreatic triacylglycerol lipase-like Neighboring gene Synthesis of cytochrome c oxidase Neighboring gene neuralized E3 ubiquitin protein ligase 4 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class A Neighboring gene guanine nucleotide-binding protein subunit beta-2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003797109.1 Unplaced Scaffold Reference MROT_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables promoter-specific chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription initiation factor TFIID subunit 10-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MROT_1.0

Genomic

  1. NW_003797109.1 Reference MROT_1.0

    Range
    1351419..1352591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012280511.1 → XP_012135901.1  transcription initiation factor TFIID subunit 10-like

    See identical proteins and their annotated locations for XP_012135901.1

    Related
    XP_012135901.1, XM_012280511.1
    Conserved Domains (1) summary
    cd07982
    Location:24 → 126
    TAF10; The TATA Binding Protein (TBP) Associated Factor 10

  2. XM_012280512.1 → XP_012135902.1  transcription initiation factor TFIID subunit 10-like

    See identical proteins and their annotated locations for XP_012135902.1

    Related
    XP_012135902.1, XM_012280512.1
    Conserved Domains (1) summary
    cd07982
    Location:24 → 126
    TAF10; The TATA Binding Protein (TBP) Associated Factor 10

  3. XM_003701103.2 → XP_003701151.1  transcription initiation factor TFIID subunit 10-like

    See identical proteins and their annotated locations for XP_003701151.1

    Related
    XP_003701151.1, XM_003701103.2
    Conserved Domains (1) summary
    cd07982
    Location:24 → 126
    TAF10; The TATA Binding Protein (TBP) Associated Factor 10
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases