U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100877371 nuclear receptor coactivator 2 [ Megachile rotundata (alfalfa leafcutting bee) ]

Gene ID: 100877371, updated on 1-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100877371
Gene description
nuclear receptor coactivator 2
See related
EnsemblRapid:LOC100877371
Gene type
protein coding
RefSeq status
MODEL
Organism
Megachile rotundata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
Orthologs
honey bee all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100877371 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797510.1 (384568..579470)

NW_003797510.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 39-like Neighboring gene uncharacterized LOC100877142 Neighboring gene uncharacterized LOC105661732 Neighboring gene uncharacterized LOC105663674 Neighboring gene uncharacterized LOC105663673 Neighboring gene succinate dehydrogenase, subunit D Neighboring gene pterin-4a-carbinolamine dehydratase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003797510.1 Unplaced Scaffold Reference MROT_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
circadian locomoter output cycles protein kaput; nuclear receptor coactivator 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MROT_1.0

Genomic

  1. NW_003797510.1 Reference MROT_1.0

    Range
    384568..579470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012294309.1 → XP_012149699.1  nuclear receptor coactivator 2 isoform X7

    See identical proteins and their annotated locations for XP_012149699.1

    Related
    XP_012149699.1, XM_012294309.1
    Conserved Domains (5) summary
    smart00353
    Location:52 → 104
    HLH; helix loop helix domain
    smart00091
    Location:131 → 184
    PAS; PAS domain
    cd00130
    Location:287 → 368
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:285 → 397
    PAS_11; PAS domain
    cl23720
    Location:692 → 814
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_012294316.1 → XP_012149706.1  nuclear receptor coactivator 2 isoform X8

    Related
    XP_012149706.1, XM_012294316.1
    Conserved Domains (5) summary
    smart00353
    Location:50 → 102
    HLH; helix loop helix domain
    smart00091
    Location:129 → 182
    PAS; PAS domain
    cd00130
    Location:285 → 366
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:283 → 395
    PAS_11; PAS domain
    cl23720
    Location:690 → 812
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  3. XM_012294312.1 → XP_012149702.1  nuclear receptor coactivator 2 isoform X7

    See identical proteins and their annotated locations for XP_012149702.1

    Related
    XP_012149702.1, XM_012294312.1
    Conserved Domains (5) summary
    smart00353
    Location:52 → 104
    HLH; helix loop helix domain
    smart00091
    Location:131 → 184
    PAS; PAS domain
    cd00130
    Location:287 → 368
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:285 → 397
    PAS_11; PAS domain
    cl23720
    Location:692 → 814
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  4. XM_012294310.1 → XP_012149700.1  nuclear receptor coactivator 2 isoform X7

    See identical proteins and their annotated locations for XP_012149700.1

    Related
    XP_012149700.1, XM_012294310.1
    Conserved Domains (5) summary
    smart00353
    Location:52 → 104
    HLH; helix loop helix domain
    smart00091
    Location:131 → 184
    PAS; PAS domain
    cd00130
    Location:287 → 368
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:285 → 397
    PAS_11; PAS domain
    cl23720
    Location:692 → 814
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  5. XM_012294320.1 → XP_012149710.1  nuclear receptor coactivator 2 isoform X11

    See identical proteins and their annotated locations for XP_012149710.1

    Related
    XP_012149710.1, XM_012294320.1
    Conserved Domains (5) summary
    smart00353
    Location:27 → 79
    HLH; helix loop helix domain
    smart00091
    Location:106 → 159
    PAS; PAS domain
    cd00130
    Location:262 → 343
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:260 → 372
    PAS_11; PAS domain
    cl23720
    Location:667 → 789
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  6. XM_012294313.1 → XP_012149703.1  nuclear receptor coactivator 2 isoform X7

    See identical proteins and their annotated locations for XP_012149703.1

    Related
    XP_012149703.1, XM_012294313.1
    Conserved Domains (5) summary
    smart00353
    Location:52 → 104
    HLH; helix loop helix domain
    smart00091
    Location:131 → 184
    PAS; PAS domain
    cd00130
    Location:287 → 368
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:285 → 397
    PAS_11; PAS domain
    cl23720
    Location:692 → 814
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  7. XM_012294315.1 → XP_012149705.1  nuclear receptor coactivator 2 isoform X7

    See identical proteins and their annotated locations for XP_012149705.1

    Related
    XP_012149705.1, XM_012294315.1
    Conserved Domains (5) summary
    smart00353
    Location:52 → 104
    HLH; helix loop helix domain
    smart00091
    Location:131 → 184
    PAS; PAS domain
    cd00130
    Location:287 → 368
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:285 → 397
    PAS_11; PAS domain
    cl23720
    Location:692 → 814
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  8. XM_012294311.1 → XP_012149701.1  nuclear receptor coactivator 2 isoform X7

    See identical proteins and their annotated locations for XP_012149701.1

    Related
    XP_012149701.1, XM_012294311.1
    Conserved Domains (5) summary
    smart00353
    Location:52 → 104
    HLH; helix loop helix domain
    smart00091
    Location:131 → 184
    PAS; PAS domain
    cd00130
    Location:287 → 368
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:285 → 397
    PAS_11; PAS domain
    cl23720
    Location:692 → 814
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  9. XM_012294314.1 → XP_012149704.1  nuclear receptor coactivator 2 isoform X7

    See identical proteins and their annotated locations for XP_012149704.1

    Related
    XP_012149704.1, XM_012294314.1
    Conserved Domains (5) summary
    smart00353
    Location:52 → 104
    HLH; helix loop helix domain
    smart00091
    Location:131 → 184
    PAS; PAS domain
    cd00130
    Location:287 → 368
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:285 → 397
    PAS_11; PAS domain
    cl23720
    Location:692 → 814
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  10. XM_012294303.1 → XP_012149693.1  nuclear receptor coactivator 2 isoform X1

    Related
    XP_012149693.1, XM_012294303.1
    Conserved Domains (6) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 419
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam06583
    Location:527 → 673
    Neogenin_C; Neogenin C-terminus
    pfam14598
    Location:336 → 448
    PAS_11; PAS domain
    cl23720
    Location:743 → 865
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  11. XM_012294308.1 → XP_012149698.1  nuclear receptor coactivator 2 isoform X6

    Related
    XP_012149698.1, XM_012294308.1
    Conserved Domains (6) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 419
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam06583
    Location:527 → 673
    Neogenin_C; Neogenin C-terminus
    pfam14598
    Location:336 → 448
    PAS_11; PAS domain
    cl23720
    Location:743 → 865
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  12. XM_012294306.1 → XP_012149696.1  nuclear receptor coactivator 2 isoform X4

    Related
    XP_012149696.1, XM_012294306.1
    Conserved Domains (6) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 419
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam06583
    Location:527 → 673
    Neogenin_C; Neogenin C-terminus
    pfam14598
    Location:336 → 448
    PAS_11; PAS domain
    cl23720
    Location:743 → 865
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  13. XM_012294322.1 → XP_012149712.1  nuclear receptor coactivator 2 isoform X12

    Related
    XP_012149712.1, XM_012294322.1
    Conserved Domains (6) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 419
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam06583
    Location:527 → 673
    Neogenin_C; Neogenin C-terminus
    pfam14598
    Location:336 → 448
    PAS_11; PAS domain
    cl23720
    Location:743 → 865
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  14. XM_012294307.1 → XP_012149697.1  nuclear receptor coactivator 2 isoform X5

    Related
    XP_012149697.1, XM_012294307.1
    Conserved Domains (6) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 419
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam06583
    Location:527 → 671
    Neogenin_C; Neogenin C-terminus
    pfam14598
    Location:336 → 448
    PAS_11; PAS domain
    cl23720
    Location:743 → 865
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  15. XM_012294305.1 → XP_012149695.1  nuclear receptor coactivator 2 isoform X3

    Related
    XP_012149695.1, XM_012294305.1
    Conserved Domains (6) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 419
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam06583
    Location:527 → 673
    Neogenin_C; Neogenin C-terminus
    pfam14598
    Location:336 → 448
    PAS_11; PAS domain
    cl23720
    Location:743 → 865
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  16. XM_012294323.1 → XP_012149713.1  circadian locomoter output cycles protein kaput isoform X13

    Related
    XP_012149713.1, XM_012294323.1
    Conserved Domains (4) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 419
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:336 → 445
    PAS_11; PAS domain

  17. XM_012294304.1 → XP_012149694.1  nuclear receptor coactivator 2 isoform X2

    Related
    XP_012149694.1, XM_012294304.1
    Conserved Domains (5) summary
    smart00353
    Location:103 → 155
    HLH; helix loop helix domain
    smart00091
    Location:182 → 235
    PAS; PAS domain
    cd00130
    Location:338 → 417
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:336 → 446
    PAS_11; PAS domain
    cl23720
    Location:741 → 863
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  18. XM_012294321.1 → XP_012149711.1  nuclear receptor coactivator 2 isoform X11

    See identical proteins and their annotated locations for XP_012149711.1

    Related
    XP_012149711.1, XM_012294321.1
    Conserved Domains (5) summary
    smart00353
    Location:27 → 79
    HLH; helix loop helix domain
    smart00091
    Location:106 → 159
    PAS; PAS domain
    cd00130
    Location:262 → 343
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:260 → 372
    PAS_11; PAS domain
    cl23720
    Location:667 → 789
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  19. XM_012294318.1 → XP_012149708.1  nuclear receptor coactivator 2 isoform X10

    Related
    XP_012149708.1, XM_012294318.1
    Conserved Domains (5) summary
    smart00353
    Location:45 → 97
    HLH; helix loop helix domain
    smart00091
    Location:124 → 177
    PAS; PAS domain
    cd00130
    Location:280 → 361
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:278 → 390
    PAS_11; PAS domain
    cl23720
    Location:685 → 807
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  20. XM_012294319.1 → XP_012149709.1  nuclear receptor coactivator 2 isoform X11

    See identical proteins and their annotated locations for XP_012149709.1

    Related
    XP_012149709.1, XM_012294319.1
    Conserved Domains (5) summary
    smart00353
    Location:27 → 79
    HLH; helix loop helix domain
    smart00091
    Location:106 → 159
    PAS; PAS domain
    cd00130
    Location:262 → 343
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:260 → 372
    PAS_11; PAS domain
    cl23720
    Location:667 → 789
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  21. XM_012294317.1 → XP_012149707.1  nuclear receptor coactivator 2 isoform X9

    Related
    XP_012149707.1, XM_012294317.1
    Conserved Domains (5) summary
    smart00353
    Location:46 → 98
    HLH; helix loop helix domain
    smart00091
    Location:125 → 178
    PAS; PAS domain
    cd00130
    Location:281 → 362
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:279 → 391
    PAS_11; PAS domain
    cl23720
    Location:686 → 808
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases