U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100875451 segmentation protein Runt-like [ Megachile rotundata (alfalfa leafcutting bee) ]

Gene ID: 100875451, updated on 1-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100875451
Gene description
segmentation protein Runt-like
See related
EnsemblRapid:LOC100875451
Gene type
protein coding
RefSeq status
MODEL
Organism
Megachile rotundata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Megachile
Orthologs
honey bee all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100875451 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current MROT_1.0 (GCF_000220905.1) Unplaced Scaffold NW_003797166.1 (2665693..2669895)

NW_003797166.1Genomic Context describing neighboring genes Neighboring gene ceramide-1-phosphate transfer protein Neighboring gene Concentrative nucleoside transporter 2 Neighboring gene uncharacterized LOC100875339 Neighboring gene runt-related transcription factor 1-like Neighboring gene uncharacterized LOC105662403 Neighboring gene uncharacterized LOC100875901 Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 3 Neighboring gene probable C-mannosyltransferase DPY19L1 Neighboring gene uncharacterized LOC100882005 Neighboring gene apyrase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003797166.1 Unplaced Scaffold Reference MROT_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
segmentation protein Runt-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Megachile rotundata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MROT_1.0

Genomic

  1. NW_003797166.1 Reference MROT_1.0

    Range
    2665693..2669895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003702774.2 → XP_003702822.1  segmentation protein Runt-like

    Related
    XP_003702822.1, XM_003702774.2
    Conserved Domains (1) summary
    pfam00853
    Location:17 → 137
    Runt; Runt domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases