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Nkx2-6 NK2 homeobox 6 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100772699, updated on 8-Mar-2024

Summary

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Gene symbol
Nkx2-6
Gene description
NK2 homeobox 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Nkx2-6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613613.1 (2885334..2888167, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (224086814..224089647)

NW_003613613.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 37 Neighboring gene NK3 homeobox 1 Neighboring gene stanniocalcin 1 Neighboring gene ubiquitin-conjugating enzyme E2 N-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Nkx-2.6
Names
Homeobox protein Nkx-2.6
homeobox protein Nkx-2.6-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613613.1 Reference CriGri_1.0 Primary Assembly

    Range
    2885334..2888167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003496183.1 → XP_003496231.1  homeobox protein Nkx-2.6

    See identical proteins and their annotated locations for XP_003496231.1

    UniProtKB/TrEMBL
    G3GUZ6
    Conserved Domains (1) summary
    pfam00046
    Location:115 → 168
    Homeobox; Homeobox domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    224086814..224089647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027390032.1 → XP_027245833.1  homeobox protein Nkx-2.6

    UniProtKB/TrEMBL
    G3GUZ6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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