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Hbp1 HMG-box transcription factor 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100766157, updated on 8-Mar-2024

Summary

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Gene symbol
Hbp1
Gene description
HMG-box transcription factor 1
Locus tag
I79_020152
See related
Ensembl:ENSCGRG00015005243
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Hbp1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615165.1 (275730..305337)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (169515788..169546011, complement)

NW_003615165.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118238833 Neighboring gene U1 spliceosomal RNA Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene component of oligomeric golgi complex 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615165.1 Reference CriGri_1.0 Primary Assembly

    Range
    275730..305337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003511587.5 → XP_003511635.1  HMG box-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_003511635.1

    UniProtKB/TrEMBL
    A0A8C2QI27, A0A8C2QI30
    Conserved Domains (2) summary
    smart00536
    Location:224 → 350
    AXH; domain in Ataxins and HMG containing proteins
    cd01388
    Location:444 → 515
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  2. XM_007652140.3 → XP_007650330.3  HMG box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2QI30, A0A9J7G0F6

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    169515788..169546011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027416997.2 → XP_027272798.1  HMG box-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2QI27, A0A8C2QI30
    Related
    ENSCGRP00015006767.1, ENSCGRT00015008291.2

  2. XM_027416995.2 → XP_027272796.1  HMG box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2QI30, A0A9J7G0F6
    Related
    ENSCGRP00015006782.1, ENSCGRT00015008311.2

  3. XM_027416998.1 → XP_027272799.1  HMG box-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C2QI30, A0A9J7JRS0
    Related
    ENSCGRP00015052060.1, ENSCGRT00015065557.1
Nucleotide Protein Strain
Heading Accession and Version

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