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Hoxc9 homeobox C9 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100763984, updated on 8-Mar-2024

Summary

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Gene symbol
Hoxc9
Gene description
homeobox C9
See related
Ensembl:ENSCGRG00015028678
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Hoxc9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614339.1 (67899..71153, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (399356712..399359989)

NW_003614339.1Genomic Context describing neighboring genes Neighboring gene homeobox C6 Neighboring gene homeobox C8 Neighboring gene uncharacterized LOC103164148 Neighboring gene microRNA mir-196a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterior/posterior pattern specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proximal/distal pattern formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein Hox-C9
Names
Homeobox protein Hox-C9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614339.1 Reference CriGri_1.0 Primary Assembly

    Range
    67899..71153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007647750.4 → XP_007645940.1  homeobox protein Hox-C9

    See identical proteins and their annotated locations for XP_007645940.1

    UniProtKB/TrEMBL
    G3HV27
    Conserved Domains (2) summary
    smart00389
    Location:192 → 241
    HOX; Homeodomain
    pfam04617
    Location:1 → 179
    Hox9_act; Hox9 activation region

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    399356712..399359989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027396751.2 → XP_027252552.1  homeobox protein Hox-C9

    UniProtKB/TrEMBL
    G3HV27
    Related
    ENSCGRP00015038371.1, ENSCGRT00015046708.2
    Conserved Domains (2) summary
    smart00389
    Location:192 → 241
    HOX; Homeodomain
    pfam04617
    Location:1 → 179
    Hox9_act; Hox9 activation region
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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