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Zeb1 zinc finger E-box binding homeobox 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100762046, updated on 8-Mar-2024

Summary

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Gene symbol
Zeb1
Gene description
zinc finger E-box binding homeobox 1
Locus tag
I79_012175
See related
Ensembl:ENSCGRG00015026668
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Zeb1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614111.1 (1025302..1077624)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (208636862..208798056, complement)

NW_003614111.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103163316 Neighboring gene uncharacterized LOC118239926 Neighboring gene high mobility group protein B1-like Neighboring gene uncharacterized LOC103163314 Neighboring gene uncharacterized LOC107979762

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger E-box-binding homeobox 1
Names
Zinc finger E-box-binding homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614111.1 Reference CriGri_1.0 Primary Assembly

    Range
    1025302..1077624
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035457532.1 → XP_035313423.1  zinc finger E-box-binding homeobox 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2QJF3, G3HN44
    Conserved Domains (4) summary
    sd00017
    Location:884 → 904
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:220 → 242
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:924 → 949
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:571 → 607
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    208636862..208798056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027405465.2 → XP_027261266.1  zinc finger E-box-binding homeobox 1 isoform X3

    UniProtKB/TrEMBL
    A0A9J7JC36, G3HN44
    Related
    ENSCGRP00015046879.1, ENSCGRT00015057979.1

  2. XM_027405463.2 → XP_027261264.1  zinc finger E-box-binding homeobox 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2QJF3, G3HN44
    Related
    ENSCGRP00015039821.1, ENSCGRT00015070446.1
    Conserved Domains (4) summary
    sd00017
    Location:884 → 904
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:220 → 242
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:924 → 949
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:571 → 607
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  3. XM_027405467.2 → XP_027261268.1  zinc finger E-box-binding homeobox 1 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GYF0, G3HN44
    Conserved Domains (4) summary
    sd00017
    Location:828 → 848
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:164 → 186
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:868 → 893
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:515 → 551
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  4. XM_027405468.2 → XP_027261269.1  zinc finger E-box-binding homeobox 1 isoform X5

    UniProtKB/TrEMBL
    A0A9J7JHZ4, G3HN44
    Related
    ENSCGRP00015056103.1, ENSCGRT00015082124.1

  5. XM_035442771.1 → XP_035298662.1  zinc finger E-box-binding homeobox 1 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GYF0, G3HN44
    Related
    ENSCGRP00015035534.2, ENSCGRT00015043316.2
    Conserved Domains (4) summary
    sd00017
    Location:828 → 848
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:164 → 186
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:868 → 893
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:515 → 551
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  6. XM_035442770.1 → XP_035298661.1  zinc finger E-box-binding homeobox 1 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GYF0, G3HN44
    Related
    ENSCGRP00015052271.1, ENSCGRT00015064079.1
    Conserved Domains (4) summary
    sd00017
    Location:828 → 848
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:164 → 186
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:868 → 893
    zf-H2C2_2; Zinc-finger double domain
    cl00084
    Location:515 → 551
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein Strain
Heading Accession and Version

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