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Zbtb18 zinc finger and BTB domain containing 18 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100751760, updated on 8-Mar-2024

Summary

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Gene symbol
Zbtb18
Gene description
zinc finger and BTB domain containing 18
See related
Ensembl:ENSCGRG00015039877
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Zfp238
Orthologs
human mouse all
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Genomic context

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See Zbtb18 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614484.1 (133486..141258, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (16372961..16381196, complement)

NW_003614484.1Genomic Context describing neighboring genes Neighboring gene AKT serine/threonine kinase 3 Neighboring gene nucleolin-like Neighboring gene SHH signaling and ciliogenesis regulator SDCCAG8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 18
Names
zinc finger protein 238

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614484.1 Reference CriGri_1.0 Primary Assembly

    Range
    133486..141258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027440574.2 → XP_027296375.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    G3HY41
    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  2. XM_003508128.5 → XP_003508176.1  zinc finger and BTB domain-containing protein 18 isoform X1

    Conserved Domains (5) summary
    smart00225
    Location:34 → 119
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:303 → 490
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:421 → 441
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:23 → 119
    BTB; BTB/POZ domain
    pfam13465
    Location:434 → 456
    zf-H2C2_2; Zinc-finger double domain

  3. XM_035459624.1 → XP_035315515.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    G3HY41
    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  4. XM_007648754.4 → XP_007646944.1  zinc finger and BTB domain-containing protein 18 isoform X2

    See identical proteins and their annotated locations for XP_007646944.1

    UniProtKB/TrEMBL
    G3HY41
    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  5. XM_027440575.2 → XP_027296376.1  zinc finger and BTB domain-containing protein 18 isoform X3

    UniProtKB/TrEMBL
    A0A8C2LC36
    Conserved Domains (1) summary
    cd18324
    Location:10 → 156
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    16372961..16381196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027418870.2 → XP_027274671.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JT33
    Related
    ENSCGRP00015046084.1, ENSCGRT00015064928.1
    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  2. XM_027418869.2 → XP_027274670.1  zinc finger and BTB domain-containing protein 18 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LB44

  3. XM_027418872.2 → XP_027274673.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JT33
    Related
    ENSCGRP00015060293.1, ENSCGRT00015055959.1
    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  4. XM_035445304.1 → XP_035301195.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JT33
    Related
    ENSCGRP00015040872.1, ENSCGRT00015078817.1
    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  5. XM_027418871.2 → XP_027274672.1  zinc finger and BTB domain-containing protein 18 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JT33
    Conserved Domains (4) summary
    COG5048
    Location:294 → 481
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:412 → 432
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18324
    Location:1 → 147
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
    pfam13465
    Location:425 → 447
    zf-H2C2_2; Zinc-finger double domain

  6. XM_027418873.2 → XP_027274674.1  zinc finger and BTB domain-containing protein 18 isoform X3

    UniProtKB/TrEMBL
    A0A8C2LC36
    Related
    ENSCGRP00015018133.1, ENSCGRT00015022268.2
    Conserved Domains (1) summary
    cd18324
    Location:10 → 156
    BTB_POZ_ZBTB18_RP58; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18 (ZBTB18)
Nucleotide Protein Strain
Heading Accession and Version

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