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stat5a signal transducer and activator of transcription 5a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100692331, updated on 11-Apr-2024

Summary

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Gene symbol
stat5a
Gene description
signal transducer and activator of transcription 5a
See related
Ensembl:ENSONIG00000001131
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
stat5b
Orthologs
zebrafish all
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Genomic context

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See stat5a in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
20
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG4 NC_031969.2 (26438842..26489566)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG4 NC_031969.1 (10309742..10360476, complement)

Linkage Group LG4 - NC_031969.2Genomic Context describing neighboring genes Neighboring gene caveolae associated protein 1a Neighboring gene signal transducer and activator of transcription 3 (acute-phase response factor) Neighboring gene uncharacterized LOC112846619 Neighboring gene phospholipase C like 5 Neighboring gene hypocretin (orexin) neuropeptide precursor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway via JAK-STAT IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in growth hormone receptor signaling pathway via JAK-STAT IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to peptide hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal transducer and activator of transcription 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031969.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    26438842..26489566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005468847.4 → XP_005468904.1  signal transducer and activator of transcription 5B

    See identical proteins and their annotated locations for XP_005468904.1

    UniProtKB/TrEMBL
    A0A669C6N0, A0A669CV55
    Related
    ENSONIP00000042495.1, ENSONIT00000083919.1
    Conserved Domains (4) summary
    cd16855
    Location:139 → 330
    STAT5_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 5 (STAT5)
    cd16849
    Location:332 → 489
    STAT5_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 5 (STAT5)
    pfam02865
    Location:2 → 124
    STAT_int; STAT protein, protein interaction domain
    cl15255
    Location:573 → 710
    SH2; Src homology 2 (SH2) domain

  2. XM_003442034.5 → XP_003442082.1  signal transducer and activator of transcription 5B

    See identical proteins and their annotated locations for XP_003442082.1

    UniProtKB/TrEMBL
    A0A669C6N0, A0A669CV55
    Related
    ENSONIP00000078037.1, ENSONIT00000040923.1
    Conserved Domains (4) summary
    cd16855
    Location:139 → 330
    STAT5_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 5 (STAT5)
    cd16849
    Location:332 → 489
    STAT5_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 5 (STAT5)
    pfam02865
    Location:2 → 124
    STAT_int; STAT protein, protein interaction domain
    cl15255
    Location:573 → 710
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
Heading Accession and Version

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