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emx1 empty spiracles homeobox 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691274, updated on 8-Mar-2024

Summary

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Gene symbol
emx1
Gene description
empty spiracles homeobox 1
See related
Ensembl:ENSONIG00000031341
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Orthologs
zebrafish all
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Genomic context

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See emx1 in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
5
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (8124634..8134376)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (23244326..23254072, complement)

Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene cell division cycle 25B Neighboring gene notochord homeobox Neighboring gene sideroflexin 5a Neighboring gene RAB11 family interacting protein 5a (class I) Neighboring gene uncharacterized LOC112843101

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein EMX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    8124634..8134376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003447768.5 → XP_003447816.2  homeobox protein EMX1

    See identical proteins and their annotated locations for XP_003447816.2

    UniProtKB/TrEMBL
    A0A669B478
    Conserved Domains (2) summary
    COG5576
    Location:86 → 195
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:140 → 193
    Homeobox; Homeobox domain

  2. XM_025900729.1 → XP_025756514.1  homeobox protein EMX1

    UniProtKB/TrEMBL
    A0A669B478
    Conserved Domains (2) summary
    COG5576
    Location:86 → 195
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:140 → 193
    Homeobox; Homeobox domain

  3. XM_025900728.1 → XP_025756513.1  homeobox protein EMX1

    UniProtKB/TrEMBL
    A0A669B478
    Related
    ENSONIP00000029377.1, ENSONIT00000077468.1
    Conserved Domains (2) summary
    COG5576
    Location:86 → 195
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:140 → 193
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

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