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vps72a vacuolar protein sorting 72 homolog a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100691178, updated on 8-Mar-2024

Summary

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Gene symbol
vps72a
Gene description
vacuolar protein sorting 72 homolog a
See related
Ensembl:ENSONIG00000002771
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
vps72
Orthologs
zebrafish all
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Genomic context

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See vps72a in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
6
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG22 NC_031985.2 (19708444..19715452, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG22 NC_031985.1 (19036885..19042711)

Linkage Group LG22 - NC_031985.2Genomic Context describing neighboring genes Neighboring gene relaxin-3 receptor 2 Neighboring gene synaptic Ras GTPase activating protein 1a Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 Neighboring gene cathepsin L1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent H2AZ histone chaperone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 72 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031985.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    19708444..19715452 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003444108.4 → XP_003444156.1  vacuolar protein sorting-associated protein 72 homolog

    UniProtKB/TrEMBL
    I3J3N5
    Related
    ENSONIP00000003475.1, ENSONIT00000003476.2
    Conserved Domains (2) summary
    pfam05764
    Location:7 → 217
    YL1; YL1 nuclear protein
    pfam08265
    Location:294 → 322
    YL1_C; YL1 nuclear protein C-terminal domain
Nucleotide Protein
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Gene LinkOut

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