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PPARD peroxisome proliferator activated receptor delta [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100666968, updated on 11-Apr-2024

Summary

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Gene symbol
PPARD
Gene description
peroxisome proliferator activated receptor delta
See related
EnsemblRapid:ENSLAFG00000017670
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See PPARD in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 1 NC_087342.1 (96622968..96702622)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573525.1 (470109..549947, complement)

Chromosome 1 - NC_087342.1Genomic Context describing neighboring genes Neighboring gene signal peptide, CUB domain and EGF like domain containing 3 Neighboring gene zinc finger protein 76 Neighboring gene DEF6 guanine nucleotide exchange factor Neighboring gene uncharacterized LOC111748117 Neighboring gene FA complementation group E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cholesterol storage IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087342.1 Reference mLoxAfr1.hap2

    Range
    96622968..96702622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064284969.1 → XP_064141039.1  peroxisome proliferator-activated receptor delta isoform X1

  2. XM_064285016.1 → XP_064141086.1  peroxisome proliferator-activated receptor delta isoform X1

  3. XM_064284975.1 → XP_064141045.1  peroxisome proliferator-activated receptor delta isoform X1

  4. XM_064285067.1 → XP_064141137.1  peroxisome proliferator-activated receptor delta isoform X3

  5. XM_064284968.1 → XP_064141038.1  peroxisome proliferator-activated receptor delta isoform X1

  6. XM_064285005.1 → XP_064141075.1  peroxisome proliferator-activated receptor delta isoform X1

  7. XM_064284986.1 → XP_064141056.1  peroxisome proliferator-activated receptor delta isoform X1

  8. XM_064284963.1 → XP_064141033.1  peroxisome proliferator-activated receptor delta isoform X1

  9. XM_064285027.1 → XP_064141097.1  peroxisome proliferator-activated receptor delta isoform X1

  10. XM_064285049.1 → XP_064141119.1  peroxisome proliferator-activated receptor delta isoform X1

  11. XM_064285038.1 → XP_064141108.1  peroxisome proliferator-activated receptor delta isoform X1

  12. XM_023540141.2 → XP_023395909.1  peroxisome proliferator-activated receptor delta isoform X5

    Related
    ENSLAFP00000034644.1, ENSLAFT00000045833.1
    Conserved Domains (2) summary
    cd06932
    Location:135 → 402
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cl02596
    Location:57 → 118
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  13. XM_023540142.2 → XP_023395910.1  peroxisome proliferator-activated receptor delta isoform X5

    Conserved Domains (2) summary
    cd06932
    Location:135 → 402
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cl02596
    Location:57 → 118
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  14. XM_023540144.2 → XP_023395912.1  peroxisome proliferator-activated receptor delta isoform X5

    Conserved Domains (2) summary
    cd06932
    Location:135 → 402
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cl02596
    Location:57 → 118
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  15. XM_010600580.3 → XP_010598882.1  peroxisome proliferator-activated receptor delta isoform X5

    See identical proteins and their annotated locations for XP_010598882.1

    Conserved Domains (2) summary
    cd06932
    Location:135 → 402
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cl02596
    Location:57 → 118
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  16. XM_010600581.3 → XP_010598883.1  peroxisome proliferator-activated receptor delta isoform X5

    See identical proteins and their annotated locations for XP_010598883.1

    Related
    ENSLAFP00000044854.1, ENSLAFT00000057406.1
    Conserved Domains (2) summary
    cd06932
    Location:135 → 402
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cl02596
    Location:57 → 118
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers

  17. XM_010600574.3 → XP_010598876.2  peroxisome proliferator-activated receptor delta isoform X2

    Related
    ENSLAFP00000014816.4, ENSLAFT00000017668.4

  18. XM_023540145.2 → XP_023395913.2  peroxisome proliferator-activated receptor delta isoform X6

    Related
    ENSLAFP00000049550.1, ENSLAFT00000040112.1

  19. XM_064284997.1 → XP_064141067.1  peroxisome proliferator-activated receptor delta isoform X1

  20. XM_064285056.1 → XP_064141126.1  peroxisome proliferator-activated receptor delta isoform X1

  21. XM_064285095.1 → XP_064141165.1  peroxisome proliferator-activated receptor delta isoform X5

  22. XM_064285073.1 → XP_064141143.1  peroxisome proliferator-activated receptor delta isoform X4

Nucleotide Protein
Heading Accession and Version

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