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croc crocodile [ Bombus terrestris (buff-tailed bumblebee) ]

Gene ID: 100648711, updated on 10-Oct-2024

Summary

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Gene symbol
croc
Gene description
crocodile
See related
EnsemblRapid:ENSBTSG00005038652
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus terrestris
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
Orthologs
fruit fly honey bee all
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Genomic context

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See croc in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
103 current iyBomTerr1.2 (GCF_910591885.1) 7 NC_063275.1 (11981855..11988647)
102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B07 NC_015768.1 (4635948..4639624)

Chromosome 7 - NC_063275.1Genomic Context describing neighboring genes Neighboring gene Paraplegin Neighboring gene uncharacterized LOC125385385 Neighboring gene uncharacterized LOC105665910 Neighboring gene forkhead box protein A4-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Study of the Metatranscriptome of Eight Social and Solitary Wild Bee Species Reveals Novel Viruses and Bee Parasites. Schoonvaere K, et al. Front Microbiol, 2018. PMID 29491849, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fork head domain-containing protein crocodile

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyBomTerr1.2

Genomic

  1. NC_063275.1 Reference iyBomTerr1.2

    Range
    11981855..11988647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012310119.3 → XP_012165509.1  fork head domain-containing protein crocodile

    UniProtKB/TrEMBL
    A0A9B2JG89
    Related
    ENSBTSP00005038298.1, ENSBTST00005059053.1
    Conserved Domains (1) summary
    pfam00250
    Location:70 → 156
    Forkhead; Forkhead domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases