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LOC100642613 uncharacterized LOC100642613 [ Bombus terrestris (buff-tailed bumblebee) ]

Gene ID: 100642613, updated on 1-Oct-2024

Summary

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Gene symbol
LOC100642613
Gene description
uncharacterized LOC100642613
See related
EnsemblRapid:ENSBTSG00005021647
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus terrestris
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
Orthologs
honey bee all
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Genomic context

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See LOC100642613 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
103 current iyBomTerr1.2 (GCF_910591885.1) 11 NC_063279.1 (12439857..12445416)
102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B11 NC_015772.1 (12694936..12700035)

Chromosome 11 - NC_063279.1Genomic Context describing neighboring genes Neighboring gene alpha-tocopherol transfer protein-like Neighboring gene uncharacterized LOC125385958 Neighboring gene Cuticular protein 57A Neighboring gene RING finger protein 121 Neighboring gene protein kinase C and casein kinase substrate in neurons protein Synd Neighboring gene teneurin transmembrane protein Ten-m

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100642613

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyBomTerr1.2

Genomic

  1. NC_063279.1 Reference iyBomTerr1.2

    Range
    12439857..12445416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003399091.4 → XP_003399139.1  uncharacterized protein LOC100642613

    UniProtKB/TrEMBL
    A0A9B0BZM0
    Related
    ENSBTSP00005059699.1, ENSBTST00005082802.1
    Conserved Domains (3) summary
    sd00017
    Location:989 → 1009
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:862 → 882
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:14 → 85
    zf-AD; Zinc-finger associated domain (zf-AD)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases