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ush Zinc finger protein ush [ Bombus terrestris (buff-tailed bumblebee) ]

Gene ID: 100642411, updated on 10-Oct-2024

Summary

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Gene symbol
ush
Gene description
Zinc finger protein ush
See related
EnsemblRapid:ENSBTSG00005032610
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus terrestris
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Bombus
Orthologs
fruit fly honey bee all
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Genomic context

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See ush in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
103 current iyBomTerr1.2 (GCF_910591885.1) 11 NC_063279.1 (11662077..11864138)
102 previous assembly Bter_1.0 (GCF_000214255.1) Linkage Group LG B11 NC_015772.1 (11916233..12119666)

Chromosome 11 - NC_063279.1Genomic Context describing neighboring genes Neighboring gene Krueppel-like factor 10 Neighboring gene uncharacterized LOC125385909 Neighboring gene female sterile (2) ltoPP43 Neighboring gene zinc finger protein 341

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II-specific DNA-binding transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein ush

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference iyBomTerr1.2

Genomic

  1. NC_063279.1 Reference iyBomTerr1.2

    Range
    11662077..11864138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003398844.4 → XP_003398892.1  zinc finger protein ush isoform X3

    UniProtKB/TrEMBL
    A0A9B0C073
    Related
    ENSBTSP00005036150.1, ENSBTST00005074499.1
    Conserved Domains (2) summary
    PHA03247
    Location:401 → 585
    PHA03247; large tegument protein UL36; Provisional
    sd00017
    Location:654 → 701
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_012313609.3 → XP_012168999.1  zinc finger protein ush isoform X2

    UniProtKB/TrEMBL
    A0A9B2MQY4
    Conserved Domains (2) summary
    PHA03247
    Location:407 → 591
    PHA03247; large tegument protein UL36; Provisional
    sd00017
    Location:660 → 707
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_012313608.3 → XP_012168998.1  zinc finger protein ush isoform X1

    UniProtKB/TrEMBL
    A0A9B2MRF0
    Conserved Domains (2) summary
    PHA03247
    Location:411 → 595
    PHA03247; large tegument protein UL36; Provisional
    sd00017
    Location:664 → 711
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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