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gabpa GA binding protein transcription factor subunit alpha [ Anolis carolinensis (green anole) ]

Gene ID: 100558009, updated on 8-Mar-2024

Summary

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Gene symbol
gabpa
Gene description
GA binding protein transcription factor subunit alpha
See related
Ensembl:ENSACAG00000014800
Gene type
protein coding
RefSeq status
MODEL
Organism
Anolis carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
Orthologs
human mouse all
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Genomic context

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See gabpa in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 3 NC_085843.1 (72216643..72236456)
102 previous assembly AnoCar2.0 (GCF_000090745.1) 3 NC_014778.1 (148257292..148278868, complement)

Chromosome 3 - NC_085843.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene junctional adhesion molecule 2 Neighboring gene ATP synthase peripheral stalk subunit F6 Neighboring gene amyloid beta precursor protein Neighboring gene uncharacterized LOC134298070

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GA-binding protein alpha chain
Names
GA binding protein transcription factor alpha subunit
GA binding protein transcription factor, alpha subunit 60kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAnoCar3.1.pri

Genomic

  1. NC_085843.1 Reference rAnoCar3.1.pri

    Range
    72216643..72236456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008107634.3 → XP_008105841.1  GA-binding protein alpha chain

    See identical proteins and their annotated locations for XP_008105841.1

    UniProtKB/TrEMBL
    G1KQE4
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:320 → 404
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

  2. XM_003219071.4 → XP_003219119.1  GA-binding protein alpha chain

    See identical proteins and their annotated locations for XP_003219119.1

    UniProtKB/TrEMBL
    G1KQE4
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:320 → 404
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

  3. XM_016992508.2 → XP_016847997.1  GA-binding protein alpha chain

    UniProtKB/TrEMBL
    G1KQE4
    Related
    ENSACAP00000014604.2
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:320 → 404
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain
Nucleotide Protein
Heading Accession and Version

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